YRC Public Data Repository - Protein Structure Prediction

Protein:	DNAT_ECOLI
Organism:	Escherichia coli
Length:	179 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DNAT_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|15834576, gi\|... - gi\|15834576\|ref\|NP_313349.1\| primosomal protein DnaI [Escherichia coli O157:H7 str. Sakai], gi\|13364... gi\|254595759, gi... - gi\|254796359\|ref\|YP_003081196.1\| DNA biosynthesis protein (primosomal protein I) [Escherichia coli O... DNAT_ECO57 - Primosomal protein 1 OS=Escherichia coli O157:H7 GN=dnaT PE=3 SV=3 DNAT_ECO5E - Primosomal protein 1 OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=dnaT PE=3 SV=1 gi\|209749066, gi... - pir\|\|E86135 DNA biosynthesis, primosomal protein i [imported] - Escherichia coli (strain O157:H7, su... gi\|217326080, gi... - gi\|217326080\|ref\|ZP_03442164.1\| primosomal protein 1 [Escherichia coli O157:H7 str. TW14588], gi\|217... gi\|12519385, gi\|... - gi\|15804936\|ref\|NP_290978.1\| primosomal protein I [Escherichia coli O157:H7 EDL933], gi\|12519385\|gb\|... gi\|189379471, gi... - gi\|189379471\|gb\|EDU97887.1\| primosomal protein 1 [Escherichia coli O157:H7 str. EC508], gi\|168797934... gi\|195937635 - gi\|195937635\|ref\|ZP_03083017.1\| primosomal protein I [Escherichia coli O157:H7 str. EC4024] gi\|208735028, gi... - gi\|208813751\|ref\|ZP_03255080.1\| primosomal protein 1 [Escherichia coli O157:H7 str. EC4045], gi\|2087... gi\|208738663, gi... - gi\|208818540\|ref\|ZP_03258860.1\| primosomal protein 1 [Escherichia coli O157:H7 str. EC4042], gi\|2087... gi\|168766643, gi... - gi\|189364127\|gb\|EDU82546.1\| primosomal protein 1 [Escherichia coli O157:H7 str. EC4486], gi\|16876664... gi\|168776660, gi... - gi\|187767996\|gb\|EDU31840.1\| primosomal protein 1 [Escherichia coli O157:H7 str. EC4196], gi\|16877666... gi\|189000697, gi... - gi\|189000697\|gb\|EDU69683.1\| primosomal protein 1 [Escherichia coli O157:H7 str. EC4076], gi\|16878165... gi\|189374838, gi... - gi\|189374838\|gb\|EDU93254.1\| primosomal protein 1 [Escherichia coli O157:H7 str. EC869], gi\|168785005... gi\|168752756, gi... - gi\|188013536\|gb\|EDU51658.1\| primosomal protein 1 [Escherichia coli O157:H7 str. EC4113], gi\|16875275... gi\|189357796, gi... - gi\|189357796\|gb\|EDU76215.1\| primosomal protein 1 [Escherichia coli O157:H7 str. EC4401], gi\|16875493... gi\|189365031, gi... - gi\|189365031\|gb\|EDU83447.1\| primosomal protein 1 [Escherichia coli O157:H7 str. EC4501], gi\|16876509...	284.0	[0..1]	[179..1]
gi\|110808151, gi... - gi\|110808151\|ref\|YP_691671.1\| primosomal protein I [Shigella flexneri 5 str. 8401], gi\|110617699\|gb\|...	283.0	[0..1]	[179..5]
DNAT_ECOL5 - Primosomal protein 1 OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=dnaT PE=3 SV=1 gi\|190908996, gi... - gi\|75242209\|ref\|ZP_00725971.1\| hypothetical protein EcolF_01000663 [Escherichia coli F11], gi\|191170... DNAT_ECO7I - Primosomal protein 1 OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=dnaT PE=3 SV=1	282.0	[0..1]	[179..1]
gi\|190901010, gi... - gi\|75227796\|ref\|ZP_00714519.1\| hypothetical protein EcolB7_01003840 [Escherichia coli B7A], gi\|19116...	280.0	[0..1]	[179..1]
DNAT_SHIDS - Primosomal protein 1 OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=dnaT PE=3 SV=1	280.0	[0..1]	[179..1]
DNAT_ECOSE - Primosomal protein 1 OS=Escherichia coli (strain SE11) GN=dnaT PE=3 SV=1 DNAT_ECO8A - Primosomal protein 1 OS=Escherichia coli O8 (strain IAI1) GN=dnaT PE=3 SV=1 DNAT_ECOHS - Primosomal protein 1 OS=Escherichia coli O9:H4 (strain HS) GN=dnaT PE=3 SV=1	280.0	[0..1]	[179..1]
DNAT_ECOUT - Primosomal protein 1 OS=Escherichia coli (strain UTI89 / UPEC) GN=dnaT PE=3 SV=1 DNAT_ECOK1 - Primosomal protein 1 OS=Escherichia coli O1:K1 / APEC GN=dnaT PE=3 SV=1	280.0	[0..1]	[179..1]
DNAT_ECOL6 - Primosomal protein 1 OS=Escherichia coli O6 GN=dnaT PE=3 SV=3 DNAT_ECO81 - Primosomal protein 1 OS=Escherichia coli O81 (strain ED1a) GN=dnaT PE=3 SV=1 DNAT_ECOL6 - Primosomal protein 1 OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=dnaT PE=3 SV=... gi\|227885152, gi... - gi\|227885152\|ref\|ZP_04002957.1\| primosomal protein I [Escherichia coli 83972], gi\|227837981\|gb\|EEJ48...	280.0	[0..1]	[179..1]
gi\|33090023 - gi\|33090023\|gb\|AAP93879.1\| primosomal protein I [Escherichia coli]	280.0	[0..1]	[179..1]
DNAT_SALTI - Primosomal protein 1 OS=Salmonella typhi GN=dnaT PE=3 SV=1 gi\|29140459, gi\|... - gi\|29144820\|ref\|NP_808162.1\| primosomal protein I [Salmonella enterica subsp. enterica serovar Typhi... DNAT_SALTY - Primosomal protein 1 OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=dnaT PE=3 SV... gi\|16763342 - gi\|16763342\|ref\|NP_458959.1\| primosomal protein I [Salmonella enterica subsp. enterica serovar Typhi... DNAT_SALCH - Primosomal protein 1 OS=Salmonella choleraesuis (strain SC-B67) GN=dnaT PE=3 SV=1 DNAT_SALPA - Primosomal protein 1 OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=dnaT PE=3 SV=1 DNAT_SALCH - Primosomal protein 1 OS=Salmonella choleraesuis GN=dnaT PE=3 SV=1 DNAT_SALTY - Primosomal protein 1 OS=Salmonella typhimurium GN=dnaT PE=3 SV=1 DNAT_SALCH - Primosomal protein 1 OS=Salmonella choleraesuis GN=dnaT PE=3 SV=1 lcl\|NC_016856.1_... - [gene=dnaT] [protein=primosomal protein I] [protein_id=YP_005240886.1] [location=complement(4816365.... DNAT_SALPA - Primosomal protein 1 OS=Salmonella paratyphi A GN=dnaT PE=3 SV=1 DNAT_SALPB - Primosomal protein 1 OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=dnaT PE=3 SV=1 DNAT_SALPB - Primosomal protein 1 OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=dnaT PE=3 SV=1 gi\|213163299 - gi\|213163299\|ref\|ZP_03349009.1\| primosomal protein DnaI [Salmonella enterica subsp. enterica serovar... DNAT_SALTY - Primosomal protein 1 OS=Salmonella typhimurium GN=dnaT PE=3 SV=1 gi\|213428399 - gi\|213428399\|ref\|ZP_03361149.1\| primosomal protein DnaI [Salmonella enterica subsp. enterica serovar... DNAT_SALTI - Primosomal protein 1 OS=Salmonella typhi GN=dnaT PE=3 SV=1 gi\|213852398 - gi\|213852398\|ref\|ZP_03381930.1\| primosomal protein DnaI [Salmonella enterica subsp. enterica serovar... DNAT_SALPC - Primosomal protein 1 OS=Salmonella paratyphi C (strain RKS4594) GN=dnaT PE=3 SV=1 gi\|197263073, gi... - gi\|197263073\|ref\|ZP_03163147.1\| primosomal protein 1 [Salmonella enterica subsp. enterica serovar Sa... DNAT_SALPK - Primosomal protein 1 OS=Salmonella paratyphi A (strain AKU_12601) GN=dnaT PE=3 SV=1 gi\|204926684, gi... - gi\|204926684\|ref\|ZP_03217886.1\| primosomal protein 1 [Salmonella enterica subsp. enterica serovar Ja... gi\|213029401 - gi\|213029401\|ref\|ZP_03343848.1\| primosomal protein DnaI [Salmonella enterica subsp. enterica serovar... gi\|168262404, gi... - gi\|205348881\|gb\|EDZ35512.1\| primosomal protein 1 [Salmonella enterica subsp. enterica serovar Hadar ... gi\|168464540, gi... - gi\|195632847\|gb\|EDX51301.1\| primosomal protein 1 [Salmonella enterica subsp. enterica serovar Newpor... DNAT_SALNS - Primosomal protein 1 OS=Salmonella newport (strain SL254) GN=dnaT PE=3 SV=1 DNAT_SALHS - Primosomal protein 1 OS=Salmonella heidelberg (strain SL476) GN=dnaT PE=3 SV=1 gi\|167991347, gi... - gi\|205330295\|gb\|EDZ17059.1\| primosomal protein 1 [Salmonella enterica subsp. enterica serovar 4,[5],... gi\|168243954, gi... - gi\|205336969\|gb\|EDZ23733.1\| primosomal protein 1 [Salmonella enterica subsp. enterica serovar Heidel...	279.0	[0..1]	[179..1]

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Predicted Domain #1

Region A:
Residues: [1-78]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSRVLTPDV VGIDALVHDH QTVLAKAEGG VVAVFANNAP AFYAVTPARL AELLALEEKL  60
   61 ARPGSDVALD DQLYQEPQ

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.32
Match:	2odkA
Description:	No description for 2odkA was found.

Predicted Domain #2

Region A:
Residues: [79-179]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AAPVAVPMGK FAMYPDWQPD ADFIRLAALW GVALREPVTT EELASFIAYW QAEGKVFHHV  60
   61 QWQQKLARSL QIGRASNGGL PKRDVNTVSE PDSQIPPGFR G

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits