YRC Public Data Repository - Protein Structure Prediction

Protein:	CDSA_SHIFL
Organism:	Shigella flexneri
Length:	249 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CDSA_SHIFL.

Description	E-value	Query Range	Subject Range
gi\|82542774, gi\|... - gi\|82542774\|ref\|YP_406721.1\| CDP-diglyceride synthetase [Shigella boydii Sb227], gi\|81244185\|gb\|ABB6...	193.0	[0..1]	[249..1]
gi\|81239713, gi\|... - gi\|82775565\|ref\|YP_401912.1\| CDP-diglyceride synthetase [Shigella dysenteriae Sd197], gi\|81239713\|gb...	192.0	[0..1]	[249..1]
gi\|3319758, gi\|2... - gi\|3319758\|emb\|CAA19924.1\| putative integral membrane protein [Streptomyces coelicolor A3(2)], gi\|21... gi\|7480824 - pir\|\|T35470 probable integral membrane protein - Streptomyces coelicolor	191.0	[0..3]	[248..164]
gi\|186699443, gi... - gi\|186896417\|ref\|YP_001873529.1\| CDP-diglyceride synthase [Yersinia pseudotuberculosis PB1/+], gi\|18... gi\|51597312, gi\|... - gi\|51597312\|ref\|YP_071503.1\| CDP-diglyceride synthase [Yersinia pseudotuberculosis IP 32953], gi\|515... Q667J5\|Q667J5_YERPS - Phosphatidate cytidylyltransferase precursor - Yersinia pseudotuberculosis	188.0	[0..1]	[246..37]
gi\|117672744, gi... - gi\|77630031\|ref\|ZP_00792617.1\| COG0575: CDP-diglyceride synthetase [Yersinia pseudotuberculosis IP 3... gi\|89105140 - gi\|89105140\|ref\|ZP_01177665.1\| COG0575: CDP-diglyceride synthetase [Yersinia pestis biovar Orientali... gi\|77633944 - gi\|77633944\|ref\|ZP_00796056.1\| COG0575: CDP-diglyceride synthetase [Yersinia pestis Angola]	188.0	[0..1]	[246..28]
gi\|108806523, gi... - gi\|108806523\|ref\|YP_650439.1\| CDP-diglyceride synthase [Yersinia pestis Antiqua], gi\|108778436\|gb\|AB... gi\|22127005, gi\|... - gi\|22127005\|ref\|NP_670428.1\| CDP-diglyceride synthase [Yersinia pestis KIM], gi\|21960051\|gb\|AAM86679... gi\|25288701 - pir\|\|AI0128 phosphatidate cytidylyltransferase (EC 2.7.7.41) [imported] - Yersinia pestis (strain CO... gi\|115346829, gi... - gi\|218928218\|ref\|YP_002346093.1\| CDP-diglyceride synthase [Yersinia pestis CO92], gi\|16121350\|ref\|NP... gi\|152961537, gi... - gi\|153950042\|ref\|YP_001400003.1\| CDP-diglyceride synthase [Yersinia pseudotuberculosis IP 31758], gi... gi\|45442568, gi\|... - gi\|45442568\|ref\|NP_994107.1\| CDP-diglyceride synthase [Yersinia pestis biovar Microtus str. 91001], ... gi\|108776758, gi... - gi\|229903553\|ref\|ZP_04518666.1\| CDP-diglyceride synthase [Yersinia pestis Nepal516], gi\|229679323\|gb... gi\|149290563, gi... - gi\|149366949\|ref\|ZP_01888982.1\| phosphatidate cytidylyltransferase [Yersinia pestis CA88-4125], gi\|1... gi\|169749855, gi... - gi\|170023321\|ref\|YP_001719826.1\| CDP-diglyceride synthase [Yersinia pseudotuberculosis YPIII], gi\|16... gi\|167470425 - gi\|167470425\|ref\|ZP_02335129.1\| phosphatidate cytidylyltransferase [Yersinia pestis FV-1] gi\|166011927, gi... - gi\|166011927\|ref\|ZP_02232825.1\| phosphatidate cytidylyltransferase [Yersinia pestis biovar Antiqua s... gi\|165912260, gi... - gi\|165939857\|ref\|ZP_02228397.1\| phosphatidate cytidylyltransferase [Yersinia pestis biovar Orientali... gi\|165920971, gi... - gi\|165927075\|ref\|ZP_02222907.1\| phosphatidate cytidylyltransferase [Yersinia pestis biovar Orientali... gi\|229837757, gi... - gi\|229837757\|ref\|ZP_04457917.1\| CDP-diglyceride synthase [Yersinia pestis Pestoides A], gi\|229704134... gi\|162421094, gi... - gi\|162421094\|ref\|YP_001607766.1\| CDP-diglyceride synthase [Yersinia pestis Angola], gi\|162353909\|gb\|... gi\|167055822, gi... - gi\|167425422\|ref\|ZP_02317175.1\| phosphatidate cytidylyltransferase [Yersinia pestis biovar Mediaeval... gi\|229689956, gi... - gi\|229843080\|ref\|ZP_04463230.1\| CDP-diglyceride synthase [Yersinia pestis biovar Orientalis str. Ind... gi\|167419870, gi... - gi\|167419870\|ref\|ZP_02311623.1\| phosphatidate cytidylyltransferase [Yersinia pestis biovar Orientali... gi\|229697345, gi... - gi\|229840979\|ref\|ZP_04461138.1\| CDP-diglyceride synthase [Yersinia pestis biovar Orientalis str. PEX... gi\|167050665, gi... - gi\|167399957\|ref\|ZP_02305475.1\| phosphatidate cytidylyltransferase [Yersinia pestis biovar Antiqua s... gi\|166211247, gi... - gi\|166211247\|ref\|ZP_02237282.1\| phosphatidate cytidylyltransferase [Yersinia pestis biovar Antiqua s...	188.0	[0..1]	[246..37]
gi\|77972716, gi\|... - gi\|77972716\|ref\|ZP_00828275.1\| COG0575: CDP-diglyceride synthetase [Yersinia frederiksenii ATCC 3364...	186.0	[0..1]	[246..28]
gi\|75240236 - gi\|75240236\|ref\|ZP_00724183.1\| COG0575: CDP-diglyceride synthetase [Escherichia coli F11] gi\|117622460, gi... - gi\|117622460\|ref\|YP_851373.1\| CDP-diglyceride synthase [Escherichia coli APEC O1], gi\|115511584\|gb\|A...	186.0	[0..1]	[249..27]
gi\|75210498 - gi\|75210498\|ref\|ZP_00710649.1\| COG0575: CDP-diglyceride synthetase [Escherichia coli B171] gi\|75194385 - gi\|75194385\|ref\|ZP_00704455.1\| COG0575: CDP-diglyceride synthetase [Escherichia coli HS] gi\|75189270 - gi\|75189270\|ref\|ZP_00702537.1\| COG0575: CDP-diglyceride synthetase [Escherichia coli E24377A] gi\|75176480 - gi\|75176480\|ref\|ZP_00696617.1\| COG0575: CDP-diglyceride synthetase [Shigella boydii BS512] gi\|83585491 - gi\|83585491\|ref\|ZP_00924136.1\| COG0575: CDP-diglyceride synthetase [Escherichia coli 101-1] gi\|110804227, gi... - gi\|110804227\|ref\|YP_687747.1\| CDP-diglyceride synthase [Shigella flexneri 5 str. 8401], gi\|110613775... gi\|75512187 - gi\|75512187\|ref\|ZP_00734759.1\| COG0575: CDP-diglyceride synthetase [Escherichia coli 53638] gi\|75258834 - gi\|75258834\|ref\|ZP_00730224.1\| COG0575: CDP-diglyceride synthetase [Escherichia coli E22] gi\|75238878 - gi\|75238878\|ref\|ZP_00722860.1\| COG0575: CDP-diglyceride synthetase [Escherichia coli E110019]	186.0	[0..1]	[249..27]
gi\|29829165, gi\|... - gi\|29829165\|ref\|NP_823799.1\| phosphatidate cytidylyltransferase [Streptomyces avermitilis MA-4680], ...	186.0	[0..3]	[248..164]

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Predicted Domain #1

Region A:
Residues: [1-249]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLAAWEWGQL SGFTTRSQRV WLAVLCGLLL ALMLFLLPEY HRNIHQPLVE ISLWASLGWW  60
   61 IVALLLVLFY PGSAAIWRNS KTLRLIFGVL TIVPFFWGML ALRAWHYDEN HYSGAIWLLY 120
  121 VMILVWGADS GAYMFGKLFG KHKLAPKVSP GKTWQGFIGG LATAAVISWG YGMWANLDVA 180
  181 PVTLLICSIV AALASVLGDL TESMFKREAG IKDSGHLIPG HGGILDRIDS LTAAVPVFAC 240
  241 LLLLVFRTL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits