YRC Public Data Repository - Protein Structure Prediction

Protein:	NIN_BACSU
Organism:	Bacillus subtilis subsp. subtilis str. 168
Length:	132 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NIN_BACSU.

Description	E-value	Query Range	Subject Range
gi\|52002050, gi\|... - gi\|52078839\|ref\|YP_077630.1\| hypothetical protein BL01819 [Bacillus licheniformis ATCC 14580], gi\|52...	222.0	[0..1]	[128..1]
gi\|42820788 - emb\|CAE02624.1\| Nin [Bacillus amyloliquefaciens] gi\|154684829, gi... - gi\|42820788\|emb\|CAE02624.1\| Nin [Bacillus amyloliquefaciens FZB42], gi\|154684829\|ref\|YP_001419990.1\|...	220.0	[0..1]	[132..1]
gi\|42739029, gi\|... - gi\|42783101\|ref\|NP_980348.1\| competence protein j [Bacillus cereus ATCC 10987], gi\|42739029\|gb\|AAS42...	181.0	[0..9]	[117..2]
gi\|51974955, gi\|... - gi\|52141486\|ref\|YP_085342.1\| competence protein J [Bacillus cereus E33L], gi\|51974955\|gb\|AAU16505.1\|...	180.0	[0..9]	[117..2]
gi\|228603027, gi... - gi\|229180280\|ref\|ZP_04307623.1\| hypothetical protein bcere0005_36250 [Bacillus cereus 172560W], gi\|2... gi\|228631166, gi... - gi\|229152204\|ref\|ZP_04280397.1\| hypothetical protein bcere0011_37430 [Bacillus cereus m1550], gi\|228... gi\|228636888, gi... - gi\|229146578\|ref\|ZP_04274947.1\| hypothetical protein bcere0012_37190 [Bacillus cereus BDRD-ST24], gi... gi\|218231642, gi... - gi\|218231642\|ref\|YP_002368806.1\| competence protein j [Bacillus cereus B4264], gi\|218159599\|gb\|ACK59... gi\|229129283, gi... - gi\|229129283\|ref\|ZP_04258255.1\| hypothetical protein bcere0015_37270 [Bacillus cereus BDRD-Cer4], gi... gi\|229192214, gi... - gi\|229192214\|ref\|ZP_04319179.1\| hypothetical protein bcere0002_38670 [Bacillus cereus ATCC 10876], g... gi\|228954280, gi... - gi\|228954280\|ref\|ZP_04116307.1\| hypothetical protein bthur0006_36510 [Bacillus thuringiensis serovar... gi\|30022092, gi\|... - gi\|30022092\|ref\|NP_833723.1\| competence protein J [Bacillus cereus ATCC 14579], gi\|29897649\|gb\|AAP10... gi\|228922756, gi... - gi\|228922756\|ref\|ZP_04086054.1\| hypothetical protein bthur0011_37410 [Bacillus thuringiensis serovar... gi\|228671860, gi... - gi\|229111478\|ref\|ZP_04241029.1\| hypothetical protein bcere0018_37230 [Bacillus cereus Rock1-15], gi\|... gi\|229081259, gi... - gi\|229081259\|ref\|ZP_04213763.1\| hypothetical protein bcere0023_38940 [Bacillus cereus Rock4-2], gi\|2... gi\|228711593, gi... - gi\|229071506\|ref\|ZP_04204725.1\| hypothetical protein bcere0025_36760 [Bacillus cereus F65185], gi\|22... gi\|228960269, gi... - gi\|228960269\|ref\|ZP_04121924.1\| hypothetical protein bthur0005_37380 [Bacillus thuringiensis serovar...	180.0	[0..9]	[117..2]
gi\|49332393, gi\|... - gi\|49480837\|ref\|YP_038064.1\| competence protein J [Bacillus thuringiensis serovar konkukian str. 97-... gi\|49180838, gi\|... - gi\|49186911\|ref\|YP_030163.1\| competence protein j [Bacillus anthracis str. Sterne], gi\|49180838\|gb\|A... gi\|47529512, gi\|... - gi\|47529512\|ref\|YP_020861.1\| competence protein j [Bacillus anthracis str. 'Ames Ancestor'], gi\|4750... gi\|30264077, gi\|... - gi\|30264077\|ref\|NP_846454.1\| competence protein j [Bacillus anthracis str. Ames], gi\|30258722\|gb\|AAP... gi\|65321395, gi\|... - gi\|65321395\|ref\|ZP_00394354.1\| hypothetical protein Bant_01004876 [Bacillus anthracis str. A2012], r... gi\|165871246, gi... - gi\|165871246\|ref\|ZP_02215896.1\| competence protein j [Bacillus anthracis str. A0488], gi\|164713165\|g... gi\|218905138, gi... - gi\|218905138\|ref\|YP_002452972.1\| competence protein j [Bacillus cereus AH820], gi\|218537357\|gb\|ACK89... gi\|254758095 - gi\|254758095\|ref\|ZP_05210122.1\| competence protein j [Bacillus anthracis str. Australia 94] gi\|254754214 - gi\|254754214\|ref\|ZP_05206249.1\| competence protein j [Bacillus anthracis str. Vollum] gi\|254744006 - gi\|254744006\|ref\|ZP_05201689.1\| competence protein j [Bacillus anthracis str. Kruger B] gi\|254736116 - gi\|254736116\|ref\|ZP_05193822.1\| competence protein j [Bacillus anthracis str. Western North America ... gi\|254721606 - gi\|254721606\|ref\|ZP_05183395.1\| competence protein j [Bacillus anthracis str. A1055] gi\|167531106, gi... - gi\|167633700\|ref\|ZP_02392024.1\| competence protein j [Bacillus anthracis str. A0442], gi\|167531106\|g... gi\|254683770 - gi\|254683770\|ref\|ZP_05147630.1\| competence protein j [Bacillus anthracis str. CNEVA-9066] gi\|167639557, gi... - gi\|167639557\|ref\|ZP_02397828.1\| competence protein j [Bacillus anthracis str. A0193], gi\|167512616\|g... gi\|229603809, gi... - gi\|229603809\|ref\|YP_002868304.1\| competence protein j [Bacillus anthracis str. A0248], gi\|229268217\|... gi\|170687137, gi... - gi\|170687137\|ref\|ZP_02878355.1\| competence protein j [Bacillus anthracis str. A0465], gi\|170668754\|g... gi\|229186248, gi... - gi\|229186248\|ref\|ZP_04313415.1\| hypothetical protein bcere0004_37930 [Bacillus cereus BGSC 6E1], gi\|... gi\|170705660, gi... - gi\|170705660\|ref\|ZP_02896123.1\| competence protein j [Bacillus anthracis str. A0389], gi\|170129200\|g... gi\|228659924, gi... - gi\|229123527\|ref\|ZP_04252723.1\| hypothetical protein bcere0016_38140 [Bacillus cereus 95/8201], gi\|2... gi\|172081987, gi... - gi\|177652652\|ref\|ZP_02935068.1\| competence protein j [Bacillus anthracis str. A0174], gi\|172081987\|g... gi\|228947725, gi... - gi\|228947725\|ref\|ZP_04110012.1\| hypothetical protein bthur0007_38520 [Bacillus thuringiensis serovar... gi\|190562953, gi... - gi\|190566034\|ref\|ZP_03018953.1\| competence protein j [Bacillus anthracis Tsiankovskii-I], gi\|1905629... gi\|228824338, gi... - gi\|228935321\|ref\|ZP_04098144.1\| hypothetical protein bthur0009_37720 [Bacillus thuringiensis serovar... gi\|196035845, gi... - gi\|196035845\|ref\|ZP_03103247.1\| competence protein j [Bacillus cereus W], gi\|195991494\|gb\|EDX55460.1... gi\|228929053, gi... - gi\|228929053\|ref\|ZP_04092083.1\| hypothetical protein bthur0010_37430 [Bacillus thuringiensis serovar... gi\|196030462, gi... - gi\|196038739\|ref\|ZP_03106047.1\| competence protein j [Bacillus cereus NVH0597-99], gi\|196030462\|gb\|E... gi\|227005942, gi... - gi\|227816780\|ref\|YP_002816789.1\| competence protein j [Bacillus anthracis str. CDC 684], gi\|22700594... gi\|225865989, gi... - gi\|225865989\|ref\|YP_002751367.1\| competence protein j [Bacillus cereus 03BB102], gi\|225788804\|gb\|ACO... gi\|118418437, gi... - gi\|118479212\|ref\|YP_896363.1\| competence protein J [Bacillus thuringiensis str. Al Hakam], gi\|118418...	178.0	[0..9]	[117..2]
gi\|47565883, gi\|... - gi\|47565883\|ref\|ZP_00236922.1\| competence protein J [Bacillus cereus G9241], gi\|47557163\|gb\|EAL15492...	178.0	[0..9]	[117..2]
gi\|163863942, gi... - gi\|89208850\|ref\|ZP_01187333.1\| competence protein J [Bacillus weihenstephanensis KBAB4], gi\|89153227...	178.0	[0..9]	[117..2]
gi\|218542973, gi... - gi\|218899162\|ref\|YP_002447573.1\| competence protein j [Bacillus cereus G9842], gi\|218542973\|gb\|ACK95... gi\|74491611, gi\|... - gi\|75760907\|ref\|ZP_00740918.1\| Competence protein J [Bacillus thuringiensis serovar israelensis ATCC... gi\|228792655, gi... - gi\|228967031\|ref\|ZP_04128068.1\| hypothetical protein bthur0004_38350 [Bacillus thuringiensis serovar... gi\|228857102, gi... - gi\|228902512\|ref\|ZP_04066664.1\| hypothetical protein bthur0014_36870 [Bacillus thuringiensis IBL 422...	177.0	[0..9]	[117..2]

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Predicted Domain #1

Region A:
Residues: [1-132]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKSWKPQEL SISYHQFTVF QKDSTPPVMD WTDEAIEKGY AAADGAISFE AQRNTKAFIL  60
   61 FRLNSSETVN SYEKKVTVPF HVTENGIHIE SIMSKRLSFD LPKGDYQLTC WTVPAEMSDL 120
  121 HADTYIIDAV SV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits