YRC Public Data Repository - Protein Structure Prediction

Protein:	FER1_NOSS1
Organism:	Nostoc sp. PCC 7120
Length:	99 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FER1_NOSS1.

Description	E-value	Query Range	Subject Range
FER_MASLA - Ferredoxin OS=Mastigocladus laminosus GN=petF PE=1 SV=2 gi\|2623659 - gi\|2623659\|gb\|AAC04840.1\| ferredoxin [Fischerella sp. PCC 7605]	134.0	[0..1]	[99..1]
gi\|113954771, gi... - gi\|113954771\|ref\|YP_731452.1\| ferredoxin [Synechococcus sp. CC9311], gi\|113882122\|gb\|ABI47080.1\| Fer...	130.0	[0..1]	[99..40]
gi\|86168215, gi\|... - gi\|87123646\|ref\|ZP_01079496.1\| Ferredoxin (2Fe-2S) [Synechococcus sp. RS9917], gi\|86168215\|gb\|EAQ694...	129.0	[0..1]	[99..1]
gi\|87301207, gi\|... - gi\|87301207\|ref\|ZP_01084048.1\| Ferredoxin (2Fe-2S) [Synechococcus sp. WH 5701], gi\|87284175\|gb\|EAQ76...	129.0	[0..1]	[99..1]
gi\|123962522, gi... - gi\|124022236\|ref\|YP_001016543.1\| ferredoxin [Prochlorococcus marinus str. MIT 9303], gi\|123962522\|gb... gi\|33635279, gi\|... - gi\|33863696\|ref\|NP_895256.1\| 2Fe-2S ferredoxin:ferredoxin [Prochlorococcus marinus str. MIT 9313], g...	129.0	[0..1]	[99..1]
gi\|23129810, gi\|... - gi\|23129810\|ref\|ZP_00111633.1\| COG0633: Ferredoxin [Nostoc punctiforme PCC 73102], gi\|186683864\|ref\|...	129.0	[0..1]	[99..1]
gi\|226708, gi\|38885 - gi\|38885\|emb\|CAA32528.1\| unnamed protein product [Anabaena sp.], gi\|226708\|prf\|\|1603425A ferredoxin ... gi\|119916, gi\|10... - gi\|119916\|sp\|P00254\|FER1_ANAVA Ferredoxin-1 (Ferredoxin I), pir\|\|FEAI ferredoxin [2Fe-2S] - Anabaena... FER1_ANAVT - Ferredoxin-1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=petF1 PE=1 SV=2	128.0	[0..1]	[99..1]
FER1_SYNP6 - Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petF1 PE=1 SV=2 FER1_SYNE7 - Ferredoxin-1 OS=Synechococcus elongatus (strain PCC 7942) GN=petF PE=3 SV=2 gi\|226709, gi\|48... - gi\|79631\|pir\|\|S08122 ferredoxin [2Fe-2S] I - Synechococcus sp, gi\|48044\|emb\|CAA32529.1\| unnamed prot...	127.0	[0..1]	[99..1]

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Predicted Domain #1

Region A:
Residues: [1-99]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATFKVTLIN EAEGTKHEIE VPDDEYILDA AEEQGYDLPF SCRAGACSTC AGKLVSGTVD  60
   61 QSDQSFLDDD QIEAGYVLTC VAYPTSDVVI QTHKEEDLY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.09691
Match:	1rfkA
Description:	Crystal Structure of 2Fe2S Ferredoxin from Thermophilic Cyanobacterium Mastigocladus Laminosus
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits