YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|108253
Organism:	Sus scrofa domesticus
Length:	126 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|108253.

Description	E-value	Query Range	Subject Range
gi\|18254389 - gi\|18254389\|gb\|AAL66741.1\|AF460238_1 atrial natriuretic peptide hormone [Notomys alexis]	115.0	[0..2]	[126..1]
ANFD_LITCT - C-type natriuretic peptide 2 OS=Lithobates catesbeiana PE=3 SV=1	113.0	[0..1]	[126..1]
ANFC_TRISC - C-type natriuretic peptide prohormone OS=Triakis scyllium PE=1 SV=2	113.0	[0..1]	[126..1]
gi\|108246 - pir\|\|S13107 atrial natriuretic peptide precursor - pig ANF_PIG - Natriuretic peptides A OS=Sus scrofa GN=NPPA PE=1 SV=1	113.0	[0..2]	[126..1]
ANF_RAT - Natriuretic peptides A OS=Rattus norvegicus GN=Nppa PE=1 SV=1	113.0	[0..2]	[126..1]
gi\|47847117 - gi\|47847117\|dbj\|BAD21299.1\| atrial natriuretic peptide [Camelus dromedarius]	111.0	[0..2]	[126..1]
ANF_BOVIN - Natriuretic peptides A OS=Bos taurus GN=NPPA PE=1 SV=2	111.0	[0..2]	[126..1]
ANF_MOUSE - Natriuretic peptides A OS=Mus musculus GN=Nppa PE=1 SV=2	110.0	[0..2]	[126..1]
gi\|6687599, gi\|6... - gi\|6687599\|emb\|CAB65023.1\| atrial natriuretic peptide [Balaenoptera physalus], gi\|6686952\|emb\|CAB647...	110.0	[0..2]	[126..1]

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Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHLSQLLACA LLLTLLSLRP SEAKPGAPPK VPRTPPGEEV AEPQAAGGGQ KKGDKTPGGG  60
   61 GANLKGDRSR LLRDLRVDTK SRAAWARLLH EHPNARKYKG GNKKGLSKGC FGLKLDRIGS 120
  121 MSGLGC

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	30.318759
Match:	PF00212.9
Description:	No description for PF00212.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits