YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|495473
Organism: Homo sapiens
Length: 987 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|495473.

Description E-value Query
Range
Subject
Range
EPHA4_CHICK - Ephrin type-A receptor 4 OS=Gallus gallus GN=EPHA4 PE=1 SV=2
1015.0 [0..1] [974..10]
EPHB1_RAT - Ephrin type-B receptor 1 OS=Rattus norvegicus GN=Ephb1 PE=1 SV=2
1011.0 [0..10] [978..12]
EPHA4_MOUSE - Ephrin type-A receptor 4 OS=Mus musculus GN=Epha4 PE=1 SV=2
1011.0 [0..3] [974..16]
gi|114554617 - gi|114554617|ref|XP_513189.2| PREDICTED: ephrin receptor EphB2 [Pan troglodytes]
1009.0 [0..10] [974..38]
gi|109101177 - gi|109101177|ref|XP_001106493.1| PREDICTED: ephrin receptor EphA4 isoform 2 [Macaca mulatta]
1007.0 [0..3] [974..16]

Back

Predicted Domain #1
Region A:
Residues: [1-179]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELRVLLCWA SLAAALEETL LNTKLETADL KWVTFPQVDG QWEELSGLDE EQHSVRTYEV  60
   61 CEVQRAPGQA HWLRTGWVPR RGAVHVYATL RFTMLECLSL PRAGRSCKET FTVFYYESDA 120
  121 DTATALTPAW MENPYIKVDT VAAEHLTRKR PGAEATGKVN VKTLRLGPLS KAGFYLAFQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 77.0
Match: 2hleA
Description: No description for 2hleA was found.

Predicted Domain #2
Region A:
Residues: [180-461]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DQGACMALLS LHLFYKKCAQ LTVNLTRFPE TVPRELVVPV AGSCVVDAVP APGPSPSLYC  60
   61 REDGQWAEQP VTGCSCAPGF EAAEGNTKCR ACAQGTFKPL SGEGSCQPCP ANSHSNTIGS 120
  121 AVCQCRVGDF RARTDPRGAP CTTPPSAPRS VVSRLNGSSL HLEWSAPLES GGREDLTYAL 180
  181 RCRECRPGGS CAPCGGDLTF DPGPRDLVEP WVVVRGLRPD FTYTFEVTAL NGVSSLATGP 240
  241 VPFEPVNVTT DREVPPAVSD IRVTRSSPSS LSLAWAVPRA PS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.0
Match: 1zlgA
Description: No description for 1zlgA was found.

Predicted Domain #3
Region A:
Residues: [462-893]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GAWLDYEVKY HEKGAEGPSS VRFLKTSENR AELRGLKRGA SYLVQVRARS EAGYGPFGQE  60
   61 HHSQTQLDES EGWREQLALI AGTAVVGVVL VLVVIVVAVL CLRKQSNGRE AEYSDKHGQY 120
  121 LIGHGTKVYI DPFTYEDPNE AVREFAKEID VSYVKIEEVI GAGEFGEVCR GRLKAPGKKE 180
  181 SCVAIKTLKG GYTERQRREF LSEASIMGQF EHPNIIRLEG VVTNSMPVMI LTEFMENGAL 240
  241 DSFLRLNDGQ FTVIQLVGML RGIASGMRYL AEMSYVHRDL AARNILVNSN LVCKVSDFGL 300
  301 SRFLEENSSD PTYTSSLGGK IPIRWTAPEA IAFRKFTSAS DAWSYGIVMW EVMSFGERPY 360
  361 WDMSNQDVIN AIEQDYRLPP PPDCPTSLHQ LMLDCWQKDR NARPRFPQVV SALDKMIRNP 420
  421 ASLKIVAREN GG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 71.0
Match: 1opkA
Description: Abl tyrosine kinase, SH3 domain; Abl tyrosine kinase; Abelsone tyrosine kinase (abl)
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [894-987]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASHPLLDQRQ PHYSAFGSVG EWLRAIKMGR YEARFAAAGF GSFELVSQIS AEDLLRIGVT  60
   61 LAGHQKKILA SVQHMKSQAK PGTPGGTGGP APQY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 87.0
Match: 2qoqA
Description: No description for 2qoqA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle