YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|55589076, gi\|...
Organism:	Pan troglodytes
Length:	375 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|55589076, gi|....

Description	E-value	Query Range	Subject Range
gi\|77404219, gi\|... - gi\|77404219\|ref\|NP_001029227.1\| adiponectin receptor 1 [Bos taurus], gi\|74354768\|gb\|AAI02260.1\| Adip...	0.0	[1..375]	[1..375]
gi\|46485456, gi\|... - gi\|46485456\|ref\|NP_997470.1\| adiponectin receptor 1 [Rattus norvegicus], gi\|38197440\|gb\|AAH61838.1\| ...	0.0	[1..375]	[1..375]
gi\|62896565 - gi\|62896565\|dbj\|BAD96223.1\| adiponectin receptor 1 variant [Homo sapiens]	0.0	[1..375]	[1..375]
gi\|50261269, gi\|... - gi\|55742864\|ref\|NP_001007194.1\| adiponectin receptor 1 [Sus scrofa], gi\|50261269\|gb\|AAT72305.1\| adip... gi\|55742864 - ref\|NP_001007194.1\| adiponectin receptor 1 [Sus scrofa]	0.0	[1..375]	[1..375]
gi\|73960225, gi\|... - gi\|73960229\|ref\|XP_537118.2\| PREDICTED: similar to adiponectin receptor 1 isoform 1 [Canis familiari...	0.0	[1..375]	[1..375]
gi\|109018833, gi... - gi\|109018833\|ref\|XP_001105957.1\| PREDICTED: similar to adiponectin receptor 1 isoform 7 [Macaca mula... gi\|172052586 - gi\|172052586\|dbj\|BAG16753.1\| adiponectin receptor1 [Macaca fuscata]	0.0	[1..375]	[1..375]
ADR1_MOUSE - Adiponectin receptor protein 1 OS=Mus musculus GN=Adipor1 PE=1 SV=1	0.0	[1..375]	[1..375]

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Predicted Domain #1

Region A:
Residues: [1-132]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSHKGSVVA QGNGAPASNR EADTVELAEL GPLLEEKGKR VIANPPKAEE EQTCPVPQEE  60
   61 EEEVRVLTLP LQAHHAMEKM EEFVYKVWEG RWRVIPYDVL PDWLKDNDYL LHGHRPPMPS 120
  121 FRACFKSIFR IH

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.967
Match:	2iw5B
Description:	No description for 2iw5B was found.

Predicted Domain #2

Region A:
Residues: [133-258]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TETGNIWTHL LGFVLFLFLG ILTMLRPNMY FMAPLQEKVV FGMFFLGAVL CLSFSWLFHT  60
   61 VYCHSEKVSR TFSKLDYSGI ALLIMGSFVP WLYYSFYCSP QPRLIYLSIV CVLGISAIIV 120
  121 AQWDRF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [259-375]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ATPKHRQTRA GVFLGLGLSG VVPTMHFTIA EGFVKATTVG QMGWFFLMAV MYITGAGLYA  60
   61 ARIPERFFPG KFDIWFQSHQ IFHVLVVAAA FVHFYGVSNL QEFRYGLEGG CTDDTLL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits