YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|142285, gi\|95...
Organism:	Agrobacterium tumefaciens
Length:	147 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|142285, gi|95....

Description	E-value	Query Range	Subject Range
gi\|15163441 - gi\|15163441\|gb\|AAK90943.1\| AGR_pTi_19p [Agrobacterium tumefaciens str. C58]	279.0	[0..1]	[147..36]
VIRD1_AGRRH - T-DNA border endonuclease virD1 OS=Agrobacterium rhizogenes GN=virD1 PE=4 SV=1	263.0	[0..1]	[147..1]
gi\|18033176 - gi\|18033176\|gb\|AAL57023.1\|AF329849_17 VirD1 [Agrobacterium tumefaciens]	251.0	[0..1]	[146..1]
gi\|86359769, gi\|... - gi\|86359769\|ref\|YP_471660.1\| T-DNA border endonuclease, VirD1 protein [Rhizobium etli CFN 42], gi\|86...	232.0	[0..1]	[147..1]
gi\|154711 - gi\|154711\|gb\|AAA98365.1\| virulence protein	198.0	[0..1]	[105..1]
gi\|115259661, gi... - gi\|116255013\|ref\|YP_770848.1\| putative endonuclease [Rhizobium leguminosarum bv. viciae 3841], gi\|11...	123.0	[0..10]	[146..11]
gi\|115292954, gi... - gi\|115345633\|ref\|YP_771815.1\| VirD1 [Roseobacter denitrificans OCh 114], gi\|115292954\|gb\|ABI93407.1\|...	73.0	[0..26]	[146..21]

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Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQGSRPTSS DIAVNQRECV KVEGFKVVST RLRSAEYESF SHQARLLGLS DSMAIRVAVR  60
   61 RIGGFLEIDA ETRHRMEAIL QSIGTLSSNI AALLSAYAEN PTMDLEALRA ERIAFGKSFA 120
  121 DLDGLLRSIL SVSRRRIDGC SLLKDAL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	116.619789
Match:	PF07328.2
Description:	No description for PF07328.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits