YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|58388730, gi\|...
Organism:	Anopheles gambiae str. PEST
Length:	110 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|58388730, gi|....

Description	E-value	Query Range	Subject Range
gi\|91092962 - gi\|91092962\|ref\|XP_972771.1\| PREDICTED: similar to Protein translation factor SUI1 homolog [Triboliu...	154.0	[0..1]	[110..1]
gi\|113411549, gi... - gi\|113412478\|ref\|XP_001131332.1\| PREDICTED: similar to suppressor of initiator codon mutations, rela...	152.0	[0..2]	[110..179]
gi\|55982003, gi\|... - gi\|55982003\|gb\|AAV69394.1\| translation factor SUI1-like protein [Aedes aegypti], gi\|157127540\|ref\|XP...	151.0	[0..1]	[110..1]
gi\|48099870 - gi\|48099870\|ref\|XP_392601.1\| PREDICTED: similar to Protein translation factor SUI1 homolog [Apis mel... gi\|156555265 - gi\|156555265\|ref\|XP_001601324.1\| PREDICTED: similar to translation initiation factor 1 [Nasonia vitr...	151.0	[0..1]	[110..1]
gi\|94365786, gi\|... - gi\|94365786\|ref\|XP_997192.1\| PREDICTED: similar to suppressor of initiator codon mutations, related ...	151.0	[0..2]	[109..132]
gi\|114667151 - gi\|114667151\|ref\|XP_511489.2\| PREDICTED: similar to isolog of yeast sui1 and rice gos2; putative [Pa...	150.0	[0..2]	[110..140]
gi\|112983000, gi... - gi\|37886145\|gb\|AAR04678.1\| Sui1 [Bombyx mori], gi\|112983000\|ref\|NP_001037082.1\| Sui1 protein [Bombyx...	150.0	[0..1]	[110..1]
gi\|109115342 - gi\|109115342\|ref\|XP_001092971.1\| PREDICTED: similar to Eukaryotic translation initiation factor 1 (e...	150.0	[0..2]	[110..265]

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Predicted Domain #1

Region A:
Residues: [1-110]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIQNLNTFD PFADAIKGAD YDVQDGLVHI RIQQRNGRKT LTTVQGLSAE YDLKKIVRAC  60
   61 KKEFACNGTV IEHPEYGEVL QLQGDQRENI CQWLTKSGLA KPEQLKVHGF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.69897
Match:	2if1A
Description:	HUMAN TRANSLATION INITIATION FACTOR EIF1, NMR, 29 STRUCTURES
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits