YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: SSG1_ORYSI
Organism: Oryza sativa Indica Group
Length: 609 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SSG1_ORYSI.

Description E-value Query
Range
Subject
Range
SSG1_ORYGL - Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza glaberrima GN=WAXY PE=1 SV=1
526.0 [0..1] [609..1]

Back

Predicted Domain #1
Region A:
Residues: [1-82]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSALTTSQLA TSATGFGIAD RSAPSSLLRH GFQGLKPRSP AGGDATSLSV TTSARATPKQ  60
   61 QRSVQRGSRR FPSVVVYATG AG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [83-609]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVVFVGAEM APWSKTGGLG DVLGGLPPAM AANGHRVMVI SPRYDQYKDA WDTSVVAEIK  60
   61 VADRYERVRF FHCYKRGVDR VFIDHPSFLE KVWGKTGEKI YGPDTGVDYK DNQMRFSLLC 120
  121 QAALEAPRIL NLNNNPYFKG TYGEDVVFVC NDWHTGPLAS YLKNNYQPNG IYRNAKVAFC 180
  181 IHNISYQGRF AFEDYPELNL SERFRSSFDF IDGYDTPVEG RKINWMKAGI LEADRVLTVS 240
  241 PYYAEELISG IARGCELDNI MRLTGITGIV NGMDVSEWDP SKDKYITAKY DATTAIEAKA 300
  301 LNKEALQAEA GLPVDRKIPL IAFIGRLEEQ KGPDVMAAAI PELMQEDVQI VLLGTGKKKF 360
  361 EKLLKSMEEK YPGKVRAVVK FNAPLAHLIM AGADVLAVPS RFEPCGLIQL QGMRYGTPCA 420
  421 CASTGGLVDT VIEGKTGFHM GRLSVDCKVV EPSDVKKVAA TLKRAIKVVG TPAYEEMVRN 480
  481 CMNQDLSWKG PAKNWENVLL GLGVAGSAPG IEGDEIAPLA KENVAAP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 84.221849
Match: 1rzuA
Description: Crystal structure of the glycogen synthase from A. tumefaciens in complex with ADP
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle