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View Structure Prediction Details

Protein: gi|115440073, gi...
Organism: Oryza sativa Japonica Group
Length: 1002 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|115440073, gi....

Predicted Domain #1
Region A:
Residues: [1-170]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELQQESSDA GTLFSAPSRN LSSSSSAFVS ANQSPFFTPR CLSARVSDHA HPENNSSLSG  60
   61 TVLKISDILS SDTLLKREQL PSATVGLLPS DASPPPSICT SSNFDTPAIV YNNPSFISTF 120
  121 SDPCQGSSSA TSTGVRSTQK EKHKRQWGLY RKSSSSQPTT SATSVNRLRS 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [171-338]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FDVYIGFHGR KASLLRFTNW LRAELEIHGI SCFASDRSRC RSSHSHDTIE RIMNASTYGV  60
   61 VILTRKSFGN PYTIEELRNF FGKKNLIPIF FDLGAADCLA RDIIEKRGEL WERHGGELWM 120
  121 LYGGMEQEWR ESVDALSRVS DVQLEANDGN WRHCILQTII VLATKLGR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [339-431]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RSVVDRVNRW RGRVEKEEFP FPRNADFVGR KKELSELELI LFGDVSGDGE REYFEIKTKQ  60
   61 RRKGLVIGRS VNNYEQVNTD DGKGKEPVLW KET

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [432-895]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KENIEMQRLG SPPRHGRPSR TKNDGRYGRK RRCRKILYGK GIACISGESG IGKTDLVLEY  60
   61 AYRFSQRYKM VLWVRGESRY IRQNYLALRT FLEVDLSVDS HLHEKGSDRC FEEQEEEAIA 120
  121 KIRQELMRDI PFLVIIDNLE SEKDWWDKRV ITDLLPHFGG ETHFIITTRL PRVMNLEPMK 180
  181 LSYLSGAEAM SLMKGGVKDY PLVEIDALKA IEEKLGRLTL GLGIVGSILS ELPITPSRLL 240
  241 DTLSRTLPIR DCSWNERDAI SLKNHEILVR LLDVCLSIFD HADGPRSLAT RMVQVCGWFA 300
  301 PSAVPIHMLA LAAHKVPKKH RRGPRWRKWW RTLTCGLATS RMKRSEAEAA AMLMRFGIAR 360
  361 CSTKPEYVQF HDLIRLYARK RGGTRMAQAV VQSIYLRGSI KHSSEHLWAA CFMFFGFGSD 420
  421 PFLVEPRPSE LIFFVKQIVV PLAINTFITY SRCNAALELL RLCT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.69897
Match: 1z6tA
Description: Structure of the apoptotic protease-activating factor 1 bound to ADP
Matching Structure (courtesy of the PDB):

Predicted Domain #5
Region A:
Residues: [896-1002]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EALERAADSM LSHAGKWRET PLSCFRPTQS EAQYTYLWQE LALLKASVLE TRAKLMLRGG  60
   61 QYDTGDDLIR KAIFILTSIC GEHHPNTVSA RETLSKLTRL LTNVQLS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.221849
Match: 2z66A
Description: No description for 2z66A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle