YRC Public Data Repository - Protein Structure Prediction

Protein:	CYB5_RABIT
Organism:	Oryctolagus cuniculus
Length:	134 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CYB5_RABIT.

Description	E-value	Query Range	Subject Range
gi\|1613840 - gi\|1613840\|gb\|AAB16807.1\| cytochrome b5 [Mesocricetus auratus]	158.0	[0..1]	[132..1]
gi\|109122478 - gi\|109122478\|ref\|XP_001083378.1\| PREDICTED: similar to Cytochrome b5 [Macaca mulatta]	157.0	[0..1]	[134..1]
gi\|123995335, gi... - gi\|123995335\|gb\|ABM85269.1\| cytochrome b5 type A (microsomal) [synthetic construct], gi\|123980760\|gb... CYB5A - cytochrome b5 type A (microsomal)	157.0	[0..1]	[134..1]
gi\|114673566 - gi\|114673566\|ref\|XP_001135885.1\| PREDICTED: similar to Cytochrome b5 isoform 4 [Pan troglodytes]	155.0	[0..1]	[134..1]
CYB5_RAT - Cytochrome b5 OS=Rattus norvegicus GN=Cyb5a PE=1 SV=2	154.0	[0..1]	[134..1]
CYB5_HORSE - Cytochrome b5 OS=Equus caballus GN=CYB5A PE=1 SV=3	154.0	[0..1]	[134..1]
gi\|57031552 - gi\|57031552\|ref\|XP_533373.1\| PREDICTED: similar to Cytochrome b5 [Canis familiaris]	154.0	[0..1]	[134..1]
CYB5_MOUSE - Cytochrome b5 OS=Mus musculus GN=Cyb5a PE=1 SV=2	153.0	[0..1]	[134..1]
CYB5_BOVIN - Cytochrome b5 OS=Bos taurus GN=CYB5A PE=1 SV=3	151.0	[0..1]	[134..1]

Back

Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAQSDKDVK YYTLEEIKKH NHSKSTWLIL HHKVYDLTKF LEEHPGGEEV LREQAGGDAT  60
   61 ENFEDVGHST DARELSKTFI IGELHPDDRS KLSKPMETLI TTVDSNSSWW TNWVIPAISA 120
  121 LIVALMYRLY MADD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.39794
Match:	2i96A
Description:	No description for 2i96A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits