YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|1082968
Organism:	Sus scrofa domesticus
Length:	103 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|1082968.

Description	E-value	Query Range	Subject Range
gi\|516197 - gi\|516197\|emb\|CAA43461.1\| interleukin-8 [Sus scrofa]	109.0	[0..1]	[103..1]
gi\|55741690 - ref\|NP_001003200.1\| interleukin 8 [Canis familiaris] IL8_CANLF - Interleukin-8 OS=Canis lupus familiaris GN=CXCL8 PE=3 SV=1	106.0	[0..1]	[101..1]
IL8_RABIT - Interleukin-8 OS=Oryctolagus cuniculus GN=CXCL8 PE=1 SV=2	105.0	[0..1]	[101..1]
CCL4_RAT - C-C motif chemokine 4 OS=Rattus norvegicus GN=Ccl4 PE=3 SV=1	102.0	[0..3]	[93..1]
IL8_FELCA - Interleukin-8 OS=Felis catus GN=CXCL8 PE=3 SV=1	102.0	[0..1]	[100..1]
gi\|47779271, gi\|... - gi\|47779271\|ref\|NP_001001437.1\| chemokine (C-C motif) ligand 3-like 3 precursor [Homo sapiens], gi\|3... gi\|60656295 - gi\|60656295\|gb\|AAX32711.1\| chemokine (C-C motif) ligand 3-like 1 [synthetic construct]	102.0	[0..3]	[93..1]
gi\|30584489, gi\|... - gi\|60653245\|gb\|AAX29317.1\| chemokine (C-C motif) ligand 3-like 1 [synthetic construct], gi\|60653243\|...	102.0	[0..3]	[93..1]

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Predicted Domain #1

Region A:
Residues: [1-103]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSKLAVAFL AVFLLSAALC EAAVLARVSA ELRCQCINTH STPFHPKFIK ELRVIESGPH  60
   61 CENSEIIVKL VNGKEVCLDP KEKWVQKVVQ IFLKRTEKQQ QQQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.09691
Match:	1iklA
Description:	NMR STUDY OF MONOMERIC HUMAN INTERLEUKIN-8 (MINIMIZED AVERAGE STRUCTURE)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits