YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|226709, gi\|48...
Organism:	Synechococcus sp.
Length:	99 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|226709, gi|48....

Description	E-value	Query Range	Subject Range
FER_MASLA - Ferredoxin OS=Mastigocladus laminosus GN=petF PE=1 SV=2 gi\|2623659 - gi\|2623659\|gb\|AAC04840.1\| ferredoxin [Fischerella sp. PCC 7605]	137.0	[0..1]	[99..1]
gi\|113954771, gi... - gi\|113954771\|ref\|YP_731452.1\| ferredoxin [Synechococcus sp. CC9311], gi\|113882122\|gb\|ABI47080.1\| Fer...	135.0	[0..1]	[99..40]
gi\|86168215, gi\|... - gi\|87123646\|ref\|ZP_01079496.1\| Ferredoxin (2Fe-2S) [Synechococcus sp. RS9917], gi\|86168215\|gb\|EAQ694...	133.0	[0..1]	[99..1]
gi\|87301207, gi\|... - gi\|87301207\|ref\|ZP_01084048.1\| Ferredoxin (2Fe-2S) [Synechococcus sp. WH 5701], gi\|87284175\|gb\|EAQ76...	133.0	[0..1]	[99..1]
gi\|123962522, gi... - gi\|124022236\|ref\|YP_001016543.1\| ferredoxin [Prochlorococcus marinus str. MIT 9303], gi\|123962522\|gb... gi\|33635279, gi\|... - gi\|33863696\|ref\|NP_895256.1\| 2Fe-2S ferredoxin:ferredoxin [Prochlorococcus marinus str. MIT 9313], g...	133.0	[0..1]	[99..1]
gi\|23129810, gi\|... - gi\|23129810\|ref\|ZP_00111633.1\| COG0633: Ferredoxin [Nostoc punctiforme PCC 73102], gi\|186683864\|ref\|...	132.0	[0..1]	[99..1]
gi\|142076, gi\|97685 - pir\|\|S25233 ferredoxin [2Fe-2S] I [validated] - Anabaena sp. (strain PCC 7120), gi\|142076\|gb\|AAA220... FER1_NOSS1 - Ferredoxin-1 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=petF PE=1 SV=2 FER1_NOSSO - Ferredoxin-1 OS=Nostoc sp. (strain ATCC 29151 / PCC 7119) GN=petF PE=1 SV=2 gi\|25282670 - pir\|\|AE2324 ferredoxin I [imported] - Nostoc sp. (strain PCC 7120)	132.0	[0..1]	[99..1]
gi\|148240315, gi... - gi\|148240315\|ref\|YP_001225702.1\| ferredoxin [Synechococcus sp. WH 7803], gi\|147848854\|emb\|CAK24405.1... gi\|116073642, gi... - gi\|116073642\|ref\|ZP_01470904.1\| Ferredoxin (2Fe-2S) [Synechococcus sp. RS9916], gi\|116068947\|gb\|EAU7... gi\|33638755, gi\|... - gi\|33865071\|ref\|NP_896630.1\| ferredoxin [Synechococcus sp. WH 8102], gi\|33638755\|emb\|CAE07050.1\| Fer... gi\|88788635, gi\|... - gi\|88807421\|ref\|ZP_01122933.1\| Ferredoxin (2Fe-2S) [Synechococcus sp. WH 7805], gi\|88788635\|gb\|EAR19... gi\|78184106, gi\|... - gi\|78184106\|ref\|YP_376541.1\| ferredoxin (2Fe-2S) [Synechococcus sp. CC9902], gi\|78168400\|gb\|ABB25497... gi\|78213663, gi\|... - gi\|78213663\|ref\|YP_382442.1\| ferredoxin (2Fe-2S) [Synechococcus sp. CC9605], gi\|78198122\|gb\|ABB35887...	131.0	[0..1]	[99..1]

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Predicted Domain #1

Region A:
Residues: [1-99]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATYKVTLVN AAEGLNTTID VADDTYILDA AEEQGIDLPY SCRAGACSTC AGKVVSGTVD  60
   61 QSDQSFLDDD QIAAGFVLTC VAYPTSDVTI ETHKEEDLY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.154902
Match:	1rfkA
Description:	Crystal Structure of 2Fe2S Ferredoxin from Thermophilic Cyanobacterium Mastigocladus Laminosus
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits