YRC Public Data Repository - Protein Structure Prediction

Protein:	HBE_RABIT
Organism:	Oryctolagus cuniculus
Length:	147 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HBE_RABIT.

Description	E-value	Query Range	Subject Range
gi\|73988393 - gi\|73988393\|ref\|XP_542374.2\| PREDICTED: similar to Hemoglobin epsilon chain [Canis familiaris]	188.0	[0..1]	[147..45]
HBB_AYTFU - Hemoglobin subunit beta OS=Aythya fuligula PE=1 SV=2	187.0	[0..1]	[147..1]
HBG2_HYLLA - Hemoglobin subunit gamma-2 OS=Hylobates lar GN=HBG2 PE=2 SV=2	187.0	[0..1]	[147..1]
HBB_CHICK - Hemoglobin subunit beta OS=Gallus gallus GN=HBB PE=1 SV=2	187.0	[0..1]	[147..1]
gi\|1360668, gi\|3... - gi\|38088\|emb\|CAA37498.1\| gamma-globin-2(A) [Macaca mulatta], gi\|342109\|gb\|AAA36845.1\| gamma-globin, ...	187.0	[0..1]	[147..1]
gi\|183885 - gi\|183885\|gb\|AAB50159.1\| hemoglobin gamma-G [Homo sapiens]	187.0	[0..1]	[147..6]
HBG_ELEMA - Hemoglobin subunit gamma OS=Elephas maximus GN=HBG PE=2 SV=3	186.0	[0..1]	[147..1]
HBG1_PONPY - Hemoglobin subunit gamma-1 OS=Pongo pygmaeus GN=HBG1 PE=2 SV=2	186.0	[0..1]	[147..1]

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Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVHFTPEEKC IISKQWGQVN IDETGGEALG RLLVVYPWTQ RFFDNFGNLS SSSAIMGNPK  60
   61 VKAHGKKVLT SFGDAIKNMD NLKGAFAKLS ELHCDKLHVD PENFKLLGNV LLIVLATHFG 120
  121 KEFTPEVQAA WQKLVSGVAI ALAHKYH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.045757
Match:	1hbrB
Description:	Hemoglobin, beta-chain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits