YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|50728672
Organism:	Gallus gallus
Length:	110 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|50728672.

Description	E-value	Query Range	Subject Range
gi\|25406958, gi\|... - gi\|8954029\|gb\|AAF82203.1\|AC067971_11 Identical to an unknown protein F23F1.8 gi\|7486045 from Arabido...	195.0	[0..1]	[104..1]
gi\|39794099 - gi\|39794099\|gb\|AAH63807.1\| Phf5a protein [Rattus norvegicus]	191.0	[0..1]	[109..1]
gi\|115969413, gi... - gi\|72032358\|ref\|XP_799069.1\| PREDICTED: similar to conserved hypothetical protein [Strongylocentrotu...	184.0	[0..1]	[110..1]
gi\|167872294, gi... - gi\|170050839\|ref\|XP_001861492.1\| pre-mRNA-splicing factor ini1 [Culex quinquefasciatus], gi\|16787229... gi\|108880783, gi... - gi\|157137675\|ref\|XP_001657126.1\| hypothetical protein AaeL_AAEL003695 [Aedes aegypti], gi\|108880783\|...	183.0	[0..1]	[110..1]
gi\|91093335 - gi\|91093335\|ref\|XP_967031.1\| PREDICTED: similar to PHD-finger 5A [Tribolium castaneum]	183.0	[0..1]	[110..1]
gi\|357123892\|ref... - PREDICTED: uncharacterized protein At1g07170/At2g30000-like [Brachypodium distachyon], PREDICTED: un... gi\|50929409, gi\|... - gi\|50929409\|ref\|XP_474232.1\| OSJNBa0084K01.16 [Oryza sativa (japonica cultivar-group)], gi\|47777378\|... gi\|116309854, gi... - gi\|125552053\|gb\|EAY97762.1\| hypothetical protein OsI_19674 [Oryza sativa Indica Group], gi\|125550107... gi\|255627145 - gi\|255627145\|gb\|ACU13917.1\| unknown [Glycine max] NbS00026464g0002... - protein AED:0.38 eAED:0.38 QI:184\|1\|0.5\|1\|0\|0.5\|2\|0\|110; (*GB) gi\|115461126\|ref\|NP_001054163.1\| (e_v... gi\|255582664, gi... - gi\|255582664\|ref\|XP_002532111.1\| Pre-mRNA-splicing factor ini1 [Ricinus communis], gi\|223528214\|gb\|E... gi\|242077540, gi... - gi\|242077540\|ref\|XP_002448706.1\| hypothetical protein SORBIDRAFT_06g031860 [Sorghum bicolor], gi\|242... gi\|225434558, gi... - gi\|225434558\|ref\|XP_002277443.1\| PREDICTED: similar to translation initiation factor IF-2 [Vitis vin... gi\|118484477, gi... - gi\|224103931\|ref\|XP_002313249.1\| predicted protein [Populus trichocarpa], gi\|224059768\|ref\|XP_002299... PGSC0003DMP400013901 - PGSC0003DMT400020416	181.0	[0..1]	[110..1]
gi\|21301692, gi\|... - gi\|31234226\|ref\|XP_319026.1\| AGAP009905-PA [Anopheles gambiae str. PEST], gi\|21301692\|gb\|EAA13837.1\|... AGAP009905-PA - PHD finger-like domain-containing protein 5A\|protein_coding\|3R:45185052:45185553:1\|gene:AGAP009905	181.0	[0..1]	[109..1]
gi\|157772625 - gi\|157772625\|ref\|XP_001664377.1\| hypothetical protein CBG15662 [Caenorhabditis briggsae AF16] CRE19561 - RP06082 WBGene00072657 locus:Cre-phf-5 status:Predicted gi\|187026944, gi... - gi\|39588836\|emb\|CAE69466.1\| Hypothetical protein CBG15662 [Caenorhabditis briggsae], gi\|187026944\|em...	181.0	[0..1]	[109..1]
gi\|114609146 - gi\|114609146\|ref\|XP_525608.2\| PREDICTED: similar to OTTHUMP00000028653 [Pan troglodytes]	181.0	[0..1]	[110..1]

Back

Predicted Domain #1

Region A:
Residues: [1-110]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKHHPDLIF CRKQAGVAIG RLCEKCDGKC VICDSYVRPC TLVRICDECN YGSYQGRCVI  60
   61 CGGPGVSDAY YCKECTIQEK DRDGCPKIVN LGSSKTDLFY ERKKYGFKKR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	88.657577
Match:	PF03660.5
Description:	No description for PF03660.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits