YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|57123
Organism:	Rattus rattus
Length:	92 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|57123.

Description	E-value	Query Range	Subject Range
gi\|50750628 - gi\|50750628\|ref\|XP_422070.1\| PREDICTED: similar to SWI/SNF-related matrix-associated actin-dependent...	1.0E-48	[1..92]	[989..1080]
gi\|46098416, gi\|... - gi\|71013808\|ref\|XP_758665.1\| hypothetical protein UM02518.1 [Ustilago maydis 521], ref\|XP_400133.1\| ...	8.0E-39	[2..91]	[101..190]
gi\|91089101 - gi\|91089101\|ref\|XP_971874.1\| PREDICTED: similar to CG5827-PA, isoform A [Tribolium castaneum]	3.0E-37	[2..92]	[32..122]
gi\|11358898, gi\|... - gi\|7576200\|emb\|CAB87861.1\| protein synthesis initiation factor-like [Arabidopsis thaliana], pir\|\|T49...	1.0E-36	[15..91]	[1529..1605]
gi\|49106493, gi\|... - gi\|67900614\|ref\|XP_680563.1\| hypothetical protein AN7294.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	6.0E-36	[1..72]	[1..72]
gi\|74151527 - gi\|74151527\|dbj\|BAE38871.1\| unnamed protein product [Mus musculus]	2.0E-34	[1..92]	[1..92]
gi\|50603815, gi\|... - gi\|52346188\|ref\|NP_001005137.1\| MGC89854 protein [Xenopus (Silurana) tropicalis], gi\|50603815\|gb\|AAH...	5.0E-34	[1..92]	[1..92]
gi\|109477260, gi... - gi\|62649657\|ref\|XP_575909.1\| PREDICTED: similar to 60S ribosomal protein L37a [Rattus norvegicus], g...	7.0E-34	[1..92]	[1..92]

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Predicted Domain #1

Region A:
Residues: [1-92]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKRTKKVGI VGKYGTRYGA SLRKMVKKIE ISQHAKYTCS FCGKTKMKRR AVGIWHCGSC  60
   61 MKTVAGGAWT YNTTSAVTVK SAIRRLKELK DQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.0
Match:	1s1i9
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits