YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|47221346
Organism:	Tetraodon nigroviridis
Length:	151 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|47221346.

Description	E-value	Query Range	Subject Range
gi\|61369149 - gi\|61369149\|gb\|AAX43292.1\| ribosomal protein S14 [synthetic construct]	6.0E-44	[1..140]	[1..140]
gi\|37748505, gi\|... - gi\|41152464\|ref\|NP_956320.1\| ribosomal protein S14 [Danio rerio], gi\|37748505\|gb\|AAH59561.1\| Ribosom...	7.0E-44	[1..140]	[1..140]
gi\|3097244 - gi\|3097244\|emb\|CAA69615.1\| ribosomal protein S14 [Mus musculus]	8.0E-44	[1..140]	[1..140]
gi\|15294039 - gi\|15294039\|gb\|AAK95196.1\|AF402822_1 40S ribosomal protein S14 [Ictalurus punctatus]	1.0E-43	[1..140]	[1..140]
RS14_RAT - 40S ribosomal protein S14 OS=Rattus norvegicus GN=Rps14 PE=2 SV=3	1.0E-43	[1..140]	[1..140]
gi\|28189929 - gi\|28189929\|dbj\|BAC56579.1\| similar to ribosomal protein S14 [Bos taurus]	4.0E-43	[1..136]	[7..142]
RS14_PODCA - 40S ribosomal protein S14 OS=Podocoryna carnea GN=RPS14 PE=2 SV=1	2.0E-42	[1..140]	[1..140]
gi\|4588920, gi\|2... - gi\|4588920\|gb\|AAD26263.1\| ribosomal protein S14 [Stomoxys calcitrans], gi\|224924382\|gb\|ACN69141.1\| 4...	4.0E-42	[1..140]	[1..140]
gi\|91091798 - gi\|91091798\|ref\|XP_970498.1\| PREDICTED: similar to S14e ribosomal protein [Tribolium castaneum]	4.0E-42	[1..140]	[1..140]

Back

Predicted Domain #1

Region A:
Residues: [1-151]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPRKGKEKK EEQVISLGPQ VAEGENVFGV CHIFASFNDT FVHVTDLSGK ETICRVTGGM  60
   61 KVKADRDESS PYAAMLAAQD VAQRCKELGI TALHIKLRAT GGNRTKTPGP GAQSALRALA 120
  121 RSGMKIGRIE DVTPIPSDST RRKGGRRGRR L

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.39794
Match:	1s1hK
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1H, Contains 40S subunit. The 60S Ribosomal Subunit Is In File 1S1I.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits