YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|109468498, gi...
Organism:	Rattus norvegicus
Length:	160 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|109468498, gi....

Description	E-value	Query Range	Subject Range
gi\|94375231 - gi\|94375231\|ref\|XP_986158.1\| PREDICTED: similar to ribosomal protein L21 [Mus musculus]	323.0	[0..2]	[160..155]
gi\|114568219 - gi\|114568219\|ref\|XP_001157777.1\| PREDICTED: similar to ribosomal protein L21 isoform 2 [Pan troglody...	311.0	[0..1]	[160..1]
gi\|76631561, gi\|... - gi\|76631568\|ref\|XP_877163.1\| PREDICTED: similar to ribosomal protein L21 isoform 6 [Bos taurus], gi\|... RL21_CAPHI - 60S ribosomal protein L21 OS=Capra hircus GN=RPL21 PE=2 SV=1	310.0	[0..1]	[160..1]
gi\|109018428 - gi\|109018428\|ref\|XP_001110717.1\| PREDICTED: similar to ribosomal protein L21 [Macaca mulatta]	310.0	[0..1]	[160..1]
gi\|57104908, gi\|... - gi\|73993380\|ref\|XP_859688.1\| PREDICTED: similar to ribosomal protein L21 isoform 7 [Canis familiaris... RPL21 - ribosomal protein L21 gi\|109123325, gi... - gi\|109123327\|ref\|XP_001099422.1\| PREDICTED: similar to 60S ribosomal protein L21 isoform 3 [Macaca m... gi\|149712387, gi... - gi\|149730048\|ref\|XP_001491540.1\| PREDICTED: similar to 60S ribosomal protein L21 isoform 1 [Equus ca... gi\|114649174, gi... - gi\|55639609\|ref\|XP_509597.1\| PREDICTED: similar to ribosomal protein L21 isoform 8 [Pan troglodytes]... tr\|M3WZ28\|M3WZ28... - Uncharacterized protein OS=Felis catus GN=LOC101092708 PE=4 SV=1 ENSCJAT00000037963 - null ENSOCUP000000211... - pep:novel scaffold:oryCun2:GL018805:674395:674877:-1 gene:ENSOCUG00000026556 transcript:ENSOCUT00000...	310.0	[0..1]	[160..1]
RL21_RAT - 60S ribosomal protein L21 OS=Rattus norvegicus GN=Rpl21 PE=1 SV=3 gi\|57686 - gi\|57686\|emb\|CAA33286.1\| rpL21 protein [Rattus rattus]	309.0	[0..1]	[160..1]

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Predicted Domain #1

Region A:
Residues: [1-160]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNTKGKRRG TRYMFSRPFR KHGVVPLATY MRIYKKGDIV DIKGMGTVQK GMPHKCYHGK  60
   61 TGRVYNVTQH AVGIIVNKQV KGKILAKRIN VRIEHIKHSK SRDSFLKRVK ENDQKKKEAK 120
  121 EKGTWVQLKR QPAPPREAHF VRTNGKEPEL LEPIPYEFMA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.0
Match:	1s1iQ
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits