YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|50806588, gi\|...
Organism:	Gallus gallus
Length:	184 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|50806588, gi|....

Description	E-value	Query Range	Subject Range
gi\|73962156 - gi\|73962156\|ref\|XP_850345.1\| PREDICTED: similar to 60S ribosomal protein L17 (L23) isoform 3 [Canis ...	281.0	[0..1]	[169..1]
gi\|114673108, gi... - gi\|114673108\|ref\|XP_001152407.1\| PREDICTED: hypothetical protein isoform 6 [Pan troglodytes], gi\|114...	280.0	[0..1]	[177..1]
gi\|94365214, gi\|... - gi\|94365214\|ref\|XP_993414.1\| PREDICTED: similar to 60S ribosomal protein L17 (L23) (Amino acid starv...	272.0	[0..1]	[184..57]
gi\|119576757, gi... - gi\|88943956\|ref\|XP_935739.1\| PREDICTED: similar to 60S ribosomal protein L17 (L23) isoform 5 [Homo s...	267.0	[0..1]	[184..1]
gi\|28189725 - gi\|28189725\|dbj\|BAC56477.1\| similar to ribosomal protein L17 [Bos taurus]	266.0	[0..1]	[174..1]

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Predicted Domain #1

Region A:
Residues: [1-184]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRYSLDPEN PTKSCKSRGS NLRVHFKNTR ETAQAIKGMH IRKATKYLKD VTLKKQCVPF  60
   61 RRYNGGVGRC AQAKQWGWTQ GRWPKKSAEF LLHMLKNAES NAELKGLDVD SLVIEHIQVN 120
  121 KAPKMRRRTY RAHGRINPYM SSPCHIEMIL TEKEQIVPKP EEEVAQKKKI SQKKLKKQKL 180
  181 MARE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.69897
Match:	1s1iN
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits