YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30259044, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	188 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259044, gi|....

Description	E-value	Query Range	Subject Range
GRPE_SINMW - Protein GrpE OS=Sinorhizobium medicae (strain WSM419) GN=grpE PE=3 SV=1	9.0E-47	[2..188]	[3..193]
gi\|83632128, gi\|... - gi\|83644085\|ref\|YP_432520.1\| molecular chaperone GrpE (heat shock protein) [Hahella chejuensis KCTC ...	2.0E-46	[1..188]	[93..284]
GRPE_RHIME - Protein GrpE OS=Rhizobium meliloti (strain 1021) GN=grpE PE=3 SV=1 GRPE_RHIME - Protein grpE OS=Rhizobium meliloti GN=grpE PE=3 SV=1	1.0E-45	[2..188]	[3..193]
GRPE_ASHGO - GrpE protein homolog, mitochondrial OS=Ashbya gossypii GN=mge1 PE=3 SV=1 GRPE_ASHGO - GrpE protein homolog, mitochondrial OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /...	1.0E-45	[29..188]	[44..208]
RPA0331 - RPA0331 possible heat shock protein (HSP-70 COFACTOR), grpE 358745:359371 forward MW:22207	2.0E-45	[7..188]	[3..190]
gi\|58377243, gi\|... - gi\|58377243\|ref\|XP_309497.2\| ENSANGP00000022118 [Anopheles gambiae str. PEST], gi\|55244839\|gb\|EAA050...	2.0E-45	[14..188]	[84..264]
UNKNOWN - Protein GrpE OS=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) GN=grpE PE=3 SV=2 GRPE_RHOPA - Protein grpE OS=Rhodopseudomonas palustris GN=grpE PE=3 SV=2	2.0E-45	[7..188]	[2..189]
gi\|78389205, gi\|... - gi\|78493664\|ref\|ZP_00845896.1\| GrpE protein [Rhodopseudomonas palustris BisB18], gi\|78389205\|gb\|EAP1...	8.0E-45	[7..188]	[50..236]
gi\|90420648, gi\|... - gi\|90420648\|ref\|ZP_01228554.1\| grpE chaperone protein [Aurantimonas sp. SI85-9A1], gi\|90334939\|gb\|EA... gi\|90420648, gi\|... - gi\|90420648\|ref\|ZP_01228554.1\| grpE chaperone protein [Aurantimonas sp. SI85-9A1], gi\|90334939\|gb\|EA...	8.0E-45	[41..188]	[66..219]
GRPE_RHIRD - Protein GrpE OS=Rhizobium radiobacter GN=grpE PE=3 SV=1 GRPE_AGRFC - Protein GrpE OS=Agrobacterium fabrum (strain C58 / ATCC 33970) GN=grpE PE=3 SV=1	1.0E-44	[8..188]	[2..188]

Back

Predicted Domain #1

Region A:
Residues: [1-188]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEERNEQVVE EVKEAQVEEA VTPENSEETV EEKSEAALLQ EKVDELQAKL TETEGRTLRL  60
   61 QADFENYKRR VQMDKQAAEK YRAQSLVSDI LPALDNFERA MQVEATDEQT KSLLQGMEMV 120
  121 HRQLLEALNK EGVEVIEAVG KQFDPNEHQA IMQVEDSEFE SNAVVEEFQK GYKLKDRVIR 180
  181 PSMVKVNQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.69897
Match:	1dkgA
Description:	Head domain of nucleotide exchange factor GrpE; Coiled-coil domain of nucleotide exchange factor GrpE
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits