YRC Public Data Repository - Protein Structure Prediction

Protein:	MT_ORYLA
Organism:	Oryzias latipes
Length:	60 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MT_ORYLA.

Description	E-value	Query Range	Subject Range
gi\|71026477 - gi\|71026477\|ref\|XP_762909.1\| hypothetical protein [Theileria parva strain Muguga] gi\|68349861 - gi\|68349861\|gb\|EAN30626.1\| hypothetical protein TP03_0785 [Theileria parva]	79.0	[0..4]	[60..779]
MTA_ONCMY - Metallothionein A OS=Oncorhynchus mykiss GN=mta PE=3 SV=1 MTA_SALSA - Metallothionein A OS=Salmo salar GN=mta PE=3 SV=1 MTA_SALAL - Metallothionein A OS=Salvelinus alpinus GN=mta PE=3 SV=1 gi\|74419050 - gi\|74419050\|gb\|ABA03253.1\| metallothionein A [Oncorhynchus nerka]	73.0	[0..1]	[60..1]
gi\|802154, gi\|10... - gi\|802154\|gb\|AAB32777.1\| metallothionein; MT [Carassius auratus], pir\|\|JC2419 metallothionein - gold...	72.0	[0..1]	[60..1]
gi\|65303586 - gi\|65303586\|emb\|CAI75964.1\| hypothetical protein [Theileria annulata] gi\|85001445 - gi\|85001445\|ref\|XP_955440.1\| hypothetical protein [Theileria annulata]	72.0	[0..4]	[59..724]
gi\|109128677 - gi\|109128677\|ref\|XP_001097779.1\| PREDICTED: hypothetical protein [Macaca mulatta]	72.0	[0..3]	[59..166]
gi\|30421163 - gi\|30421163\|gb\|AAP31403.1\| metallothionein A [Salvelinus alpinus]	71.0	[0..1]	[60..1]

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Predicted Domain #1

Region A:
Residues: [1-60]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPCDCSKTG KCNCGGSCTC TNCSCTSCKK SCCACCPSGC TKCASGCVCK GKTCDTTCCQ  60
   61

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	7.69897
Match:	4mt2A
Description:	COMPARISON OF THE NMR SOLUTION STRUCTURE AND THE X-RAY CRYSTAL STRUCTURE OF RAT METALLOTHIONEIN-2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits