YRC Public Data Repository - Protein Structure Prediction

Protein:	JGL_ARATH
Organism:	Arabidopsis thaliana
Length:	207 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for JGL_ARATH.

Description	E-value	Query Range	Subject Range
gi\|68404873 - gi\|68404873\|ref\|XP_690332.1\| PREDICTED: similar to Zinc finger protein 180 (HHZ168), partial [Danio ...	371.0	[0..3]	[206..48]
gi\|73947291 - gi\|73947291\|ref\|XP_541354.2\| PREDICTED: similar to Zinc finger protein 606 (Zinc finger protein 328)...	370.0	[0..3]	[206..2557]
gi\|109066104 - gi\|109066104\|ref\|XP_001112671.1\| PREDICTED: similar to zinc finger protein 3 isoform 2 [Macaca mulat...	365.0	[0..3]	[206..373]
gi\|55629028 - gi\|55629028\|ref\|XP_519246.1\| PREDICTED: zinc finger protein 3 [Pan troglodytes]	355.0	[0..3]	[206..209]
gi\|208968123 - gi\|208968123\|dbj\|BAG73900.1\| zinc finger protein 3 [synthetic construct] ZNF3 - zinc finger protein 3	354.0	[0..3]	[206..209]

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Predicted Domain #1

Region A:
Residues: [1-207]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRADENNTLD LNNLPDDPSR DIFPFFEEGF SSSSSSGGFR EKQTKDGKEY ECRFCSLKFF  60
   61 KSQALGGHMN RHRQERETES LNKARELVLR NDSFPPHQGP PSFSYHQGDV HIGDLTQFKP 120
  121 MMYPPRHFSL PGSSSILQLQ PPYLYPPLSS PFPQHNTNIG NNGTRHQTLT NSVCGGRALP 180
  181 DSSYTFIGAP VANGSRVAPH LPPHHGL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	67.221849
Match:	2i13A
Description:	No description for 2i13A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits