YRC Public Data Repository - Protein Structure Prediction

Protein:	TAF13_ARATH
Organism:	Arabidopsis thaliana
Length:	126 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TAF13_ARATH.

Description	E-value	Query Range	Subject Range
gi\|58569313 - gi\|58569313\|gb\|AAW79027.1\| GekBS181P [Gekko japonicus]	144.0	[0..17]	[122..18]
gi\|49522268 - gi\|49522268\|gb\|AAH74456.1\| LOC443712 protein [Xenopus laevis]	141.0	[0..17]	[122..17]
gi\|113411807 - gi\|113411807\|ref\|XP_001125873.1\| PREDICTED: similar to TATA box-binding protein-associated factor, R...	141.0	[0..31]	[122..58]
gi\|62859555, gi\|... - gi\|89269834\|emb\|CAJ82534.1\| TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated facto...	140.0	[0..17]	[122..18]
gi\|51859045, gi\|... - gi\|52219168\|ref\|NP_001004665.1\| TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated f...	140.0	[0..16]	[122..17]
gi\|125570227, gi... - gi\|53792373\|dbj\|BAD53126.1\| putative TAF13 [Oryza sativa Japonica Group], gi\|53791421\|dbj\|BAD53935.1...	140.0	[0..17]	[124..51]
gi\|194201810, gi... - gi\|195551093\|ref\|XP_002076161.1\| GD11962 [Drosophila simulans], gi\|194201810\|gb\|EDX15386.1\| GD11962 ... gi\|220942402, gi... - gi\|220955714\|gb\|ACL90400.1\| Taf13-PA [synthetic construct], gi\|220942402\|gb\|ACL83744.1\| Taf13-PA [sy... Taf13-PA - The gene TBP-associated factor 13 is referred to in FlyBase by the symbol Dmel\Taf13 (CG10756, FBgn0...	139.0	[0..22]	[122..29]

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Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNTPAAAAS SSSKSKAAGT SQPQEKRKTL FQKELQHMMY GFGDEQNPLP ESVALVEDIV  60
   61 VEYVTDLTHK AQEIGSKRGR LLVDDFLYLI RKDLPKLNRC RELLAMQEEL KQARKAFDVD 120
  121 EKELVD

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.2
Match:	1eqzD
Description:	Histone H4
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits