| Protein: | TA12B_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 683 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TA12B_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
259.0 | [0..6] | [565..30] |
|
Region A: Residues: [1-164] |
1 11 21 31 41 51
| | | | | |
1 MAEPIPSSSL SPKSLQSPNP MEPSPASSTP LPSSSSQQQQ LMTAPISNSV NSAASPAMTV 60
61 TTTEGIVIQN NSQPNISSPN PTSSNPPIGA QIPSPSPLSH PSSSLDQQTQ TQQLVQQTQQ 120
121 LPQQQQQIMQ QISSSPIPQL SPQQQQILQQ QHMTSQQIPM SSYQ
|
| Detection Method: |  |
| Confidence: | 1.24 |
| Match: | 2j63A |
| Description: | No description for 2j63A was found. |
|
Region A: Residues: [165-361] |
1 11 21 31 41 51
| | | | | |
1 IAQSLQRSPS LSRLSQIQQQ QQQQHQGQYG NVLRQQAGLY GTMNFGGSGS VQQSQQNQQM 60
61 VNPNMSRAGL VGQSGHLPML NGAAGAAQMN IQPQLLAASP RQKSGMVQGS QFHPGSSGQQ 120
121 LQGMQAMGMM GSLNLTSQMR GNPALYAQQR INPGQMRQQL SQQNALTSPQ VQNLQRTSSL 180
181 AFMNPQLSGL AQNGQAG
|
| Detection Method: | |
| Confidence: | 4.0 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [362-524] |
1 11 21 31 41 51
| | | | | |
1 MMQNSLSQQQ WLKQMSGITS PNSFRLQPSQ RQALLLQQQQ QQQQQLSSPQ LHQSSMSLNQ 60
61 QQISQIIQQQ QQQSQLGQSQ MNQSHSQQQL QQMQQQLQQQ PQQQMQQQQQ QQQQMQINQQ 120
121 QPSPRMLSHA GQKSVSLTGS QPEATQSGTT TPGGSSSQGT EAT
|
| Detection Method: | |
| Confidence: | 1.16 |
| Match: | 1jchA |
| Description: | Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [525-602] |
1 11 21 31 41 51
| | | | | |
1 NQLLGKRKIQ DLVSQVDVHA KLDPDVEDLL LEVADDFIDS VTSFACSLAK HRKSSVLEPK 60
61 DILLHLEKNL HLTIPGFS
|
| Detection Method: | |
| Confidence: | 34.221849 |
| Match: | 1h3oB |
| Description: | TAF(II)-20, (TAF(II)-15, hTAF12), histone fold domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.581886805340955 | bayes_pls_golite062009 |
|
Region A: Residues: [603-683] |
1 11 21 31 41 51
| | | | | |
1 SEDKRQTKTV PTDLHKKRLA MVRALLESSK PETNASNSKE TMRQAMVNPN GPNHLLRPSQ 60
61 SSEQLVSQTS GPHILQHMTR Y
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.378 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.378 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.368 | a.58.1 | Chemotaxis receptor methyltransferase CheR, N-terminal domain |
| View | Download | 0.330 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.322 | a.58.1 | Chemotaxis receptor methyltransferase CheR, N-terminal domain |
