YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|6093607
Organism:	Plasmodium falciparum
Length:	522 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|6093607.

Description	E-value	Query Range	Subject Range
gi\|20808076, gi\|... - gi\|20808076\|ref\|NP_623247.1\| UDP-N-acetylmuramyl tripeptide synthase [Thermoanaerobacter tengcongens... gi\|20808076 - gi\|20808076\|ref\|NP_623247.1\| UDP-N-acetylmuramyl tripeptide synthase [Thermoanaerobacter tengcongens...	301.0	[0..7]	[484..16]
MURE_CALS4 - UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase OS=Caldanaerobacter subterrane... MURE_THETN - UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase OS=Thermoanaerobacter tengcong...	301.0	[0..7]	[484..6]
gi\|166856057, gi... - gi\|76796234\|ref\|ZP_00778600.1\| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter ethanol... gi\|167040637, gi... - gi\|167040637\|ref\|YP_001663622.1\| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp. X... gi\|242257445, gi... - gi\|242257445\|ref\|ZP_04802310.1\| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp. X5...	300.0	[0..23]	[485..19]
gi\|69256627, gi\|... - gi\|69256627\|ref\|ZP_00606121.1\| UDP-N-acetylmuramyl-tripeptide synthetase [Magnetococcus sp. MC-1], g...	297.0	[0..3]	[482..37]
MURE1_CLOAB - UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase 1 OS=Clostridium acetobutylicu... MURE1_CLOAB, MUE... - UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase 1 OS=Clostridium acetobutylicu...	296.0	[0..1]	[484..1]
MURE_SYNY3 - UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase OS=Synechocystis sp. (strain A... gi\|7451746 - pir\|\|S75968 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamino-pimelate ligase (EC 6.3.2.13) - Synec... MURE_SYNY3 - UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase OS=Synechocystis sp. (strain P...	292.0	[0..24]	[482..33]
gi\|242257906, gi... - gi\|242257906\|ref\|ZP_04802752.1\| FolC bifunctional protein [Thermoanaerobacter sp. X513], gi\|24223058... gi\|114804496, gi... - gi\|167040832\|ref\|YP_001663817.1\| FolC bifunctional protein [Thermoanaerobacter sp. X514], gi\|1668550...	290.0	[0..59]	[510..1]
gi\|95930736, gi\|... - gi\|95930736\|ref\|ZP_01313469.1\| UDP-N-acetylmuramyl-tripeptide synthetases [Desulfuromonas acetoxidan...	290.0	[0..19]	[487..15]
MURE_PASMU - UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase OS=Pasteurella multocida (stra... MURE_PASMU - UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase OS=Pasteurella multocida GN=mu...	287.0	[0..19]	[487..12]

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Predicted Domain #1

Region A:
Residues: [1-522]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKNQNDKSN KNDIIHMNDK SGNYDKNNIN NFIDKNDEHD MSDILHKINN EEKKYEEIKS  60
   61 YSECLELLYK THALKLGLDN PKKLNESFGH PCDKYKTIHI AGTNGKGSVC YKIYTCLKIK 120
  121 KFKVGLFSSP HIFSLRERII VNDEPISEKE LIHLVNEVLN KAKKLYINPS FFEIITLVAF 180
  181 LHFLNKKVDY AIIETGIGGR LDATNILTKP EVIVITSIGY DHLNILGDNL PIICNEKIGI 240
  241 FKKDANVVIG PSVAIYKNVF DKAKELNCTI HTVVPEPRGE RYNEENSRIA LRTLEILNIS 300
  301 IDYFLKSIIP IKPPLRIQYL ATEQIQHIKK KFSPDNLEHN VQYPLAVILD VGHNETAIDR 360
  361 LCTDINYFHK GQNIRICISI TKPRNLSVFH PFIAQFGDTL KDIFYLPSLN ERTYDFEEIV 420
  421 EMLNNEEEIK NEIKELILSS SKKVGKWLAH EKQGNINEED ALKLYKRGCI PLIIKNAFLE 480
  481 CCKDNSILLV CGTFFVFDEV LNVFDIHSDM QDTIFMNEPS LV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	70.69897
Match:	1w78A
Description:	E.coli FolC in complex with DHPP and ADP
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits