YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15080870, gi\|...
Organism:	Plasmodium falciparum
Length:	230 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15080870, gi|....

Description	E-value	Query Range	Subject Range
gi\|23486979 - gi\|23486979\|gb\|EAA20933.1\| beta-hydroxyacyl-ACP dehydratase precursor [Plasmodium yoelii yoelii] gi\|83033191 - gi\|83033191\|ref\|XP_729368.1\| beta-hydroxyacyl-ACP dehydratase precursor [Plasmodium yoelii yoelii st...	239.0	[0..1]	[230..4]
gi\|68072637 - gi\|68072637\|ref\|XP_678232.1\| beta-hydroxyacyl-acp dehydratase precursor [Plasmodium berghei strain A... gi\|56498632 - gi\|56498632\|emb\|CAH98592.1\| beta-hydroxyacyl-acp dehydratase precursor, putative [Plasmodium berghei...	232.0	[0..1]	[230..1]
gi\|70953063, gi\|... - gi\|70953063\|ref\|XP_745656.1\| beta-hydroxyacyl-acp dehydratase precursor [Plasmodium chabaudi chabaud... gi\|56517572, gi\|... - gi\|56526050\|emb\|CAH77450.1\| beta-hydroxyacyl-acp dehydratase precursor, putative [Plasmodium chabaud...	227.0	[0..1]	[230..1]
gi\|18399910, gi\|... - gi\|25090441\|gb\|AAN72302.1\| At2g22230/T26C19.11 [Arabidopsis thaliana], gi\|21928166\|gb\|AAM78110.1\| At...	208.0	[0..52]	[229..41]
gi\|72255615 - gi\|72255615\|gb\|AAZ66933.1\| 117M18_14 [Brassica rapa]	197.0	[0..51]	[230..44]
gi\|72384436 - gi\|72384436\|gb\|AAZ67552.1\| 52O08_29 [Brassica rapa subsp. pekinensis]	195.0	[0..51]	[230..44]
gi\|14334124 - gi\|14334124\|gb\|AAK60545.1\|AF382146_1 putative 3-keto-acyl-ACP dehydratase [Brassica napus]	194.0	[0..51]	[230..44]

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Predicted Domain #1

Region A:
Residues: [1-230]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFLIIHIAV IVLPFVLMID VKRENSFFLR HSPKRLYKKA DYNNMYDKII KKQQNRIYDV  60
   61 SSQINQDNIN GQNISFNLTF PNYDTSIDIE DIKKILPHRY PFLLVDKVIY MQPNKTIIGL 120
  121 KQVSTNEPFF NGHFPQKQIM PGVLQIEALA QLAGILCLKS DDSQKNNLFL FAGVDGVRWK 180
  181 KPVLPGDTLT MQANLISFKS SLGIAKLSGV GYVNGKVVIN ISEMTFALSK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.221849
Match:	1z6bA
Description:	Crystal structure of Plasmodium falciparum FabZ at 2.1 A
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits