YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24744851
Organism:	Plasmodium falciparum
Length:	1085 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24744851.

Description	E-value	Query Range	Subject Range
gi\|23486814 - gi\|23486814\|gb\|EAA20901.1\| m1-family aminopeptidase [Plasmodium yoelii yoelii] gi\|83033115 - gi\|83033115\|ref\|XP_729336.1\| m1-family aminopeptidase [Plasmodium yoelii yoelii str. 17XNL]	798.0	[0..1]	[1085..1]
gi\|56501016 - gi\|56501016\|emb\|CAH98191.1\| m1-family aminopeptidase, putative [Plasmodium berghei] gi\|68076421 - gi\|68076421\|ref\|XP_680130.1\| m1-family aminopeptidase [Plasmodium berghei strain ANKA]	782.0	[0..1]	[1085..1]
gi\|95109857, gi\|... - gi\|95109857\|emb\|CAK14562.1\| aminopeptidase N [Pseudomonas entomophila L48], gi\|104780870\|ref\|YP_6073... gi\|95109857 - gi\|95109857\|emb\|CAK14562.1\| aminopeptidase N [Pseudomonas entomophila L48]	758.0	[0..191]	[1082..1]
gi\|148512989, gi... - gi\|82737038\|ref\|ZP_00899891.1\| Peptidase M, neutral zinc metallopeptidases, zinc-binding site [Pseud...	756.0	[0..191]	[1082..1]
gi\|26988742, gi\|... - gi\|26988742\|ref\|NP_744167.1\| aminopeptidase N [Pseudomonas putida KT2440], gi\|24983534\|gb\|AAN67631.1...	756.0	[0..191]	[1082..1]
gi\|48862107, gi\|... - gi\|90021382\|ref\|YP_527209.1\| alanyl aminopeptidase [Saccharophagus degradans 2-40], gi\|89950982\|gb\|A...	748.0	[0..191]	[1084..1]
gi\|66044935, gi\|... - gi\|66044935\|ref\|YP_234776.1\| peptidase M1, membrane alanine aminopeptidase [Pseudomonas syringae pv....	745.0	[0..191]	[1082..1]
gi\|70730645, gi\|... - gi\|70730645\|ref\|YP_260386.1\| aminopeptidase N [Pseudomonas fluorescens Pf-5], gi\|68344944\|gb\|AAY9255...	744.0	[0..191]	[1082..1]
gi\|226718914, gi... - gi\|67158470\|ref\|ZP_00419415.1\| Peptidase M1, membrane alanine aminopeptidase [Azotobacter vinelandii... gi\|53610451, gi\|... - gi\|67158470\|ref\|ZP_00419415.1\| Peptidase M1, membrane alanine aminopeptidase [Azotobacter vinelandii...	743.0	[0..191]	[1082..1]
gi\|28854192, gi\|... - gi\|28870943\|ref\|NP_793562.1\| aminopeptidase N [Pseudomonas syringae pv. tomato str. DC3000], gi\|2885... tr\|Q87YK7\|Q87YK7... - Aminopeptidase N OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=pepN PE=4 SV=1	743.0	[0..191]	[1082..1]

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Predicted Domain #1

Region A:
Residues: [1-190]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLTKGCAYK YIIFTVLILA NILYDNKKRC MIKKNLRISS CGIISRLLKS NSNYNSFNKN  60
   61 YNFTSAISEL QFSNFWNLDI LQKDIFSNIH NNKNKPQSYI IHKRLMSEKG DNNNNNHQNN 120
  121 NGNDNKKRLG SVVNNEENTC SDKRMKPFEE GHGITQVDKM NNNSDHLQQN GVMNLNSNNV 180
  181 ENNNNNNSVV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [191-1085]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VKKNEPKIHY RKDYKPSGFI INNVTLNINI HDNETIVRSV LDMDISKHNV GEDLVFDGVG  60
   61 LKINEISINN KKLVEGEEYT YDNEFLTIFS KFVPKSKFAF SSEVIIHPET NYALTGLYKS 120
  121 KNIIVSQCEA TGFRRITFFI DRPDMMAKYD VTVTADKEKY PVLLSNGDKV NEFEIPGGRH 180
  181 GARFNDPHLK PCYLFAVVAG DLKHLSATYI TKYTKKKVEL YVFSEEKYVS KLQWALECLK 240
  241 KSMAFDEDYF GLEYDLSRLN LVAVSDFNVG AMENKGLNIF NANSLLASKK NSIDFSYARI 300
  301 LTVVGHEYFH NYTGNRVTLR DWFQLTLKEG LTVHRENLFS EEMTKTVTTR LSHVDLLRSV 360
  361 QFLEDSSPLS HPIRPESYVS MENFYTTTVY DKGSEVMRMY LTILGEEYYK KGFDIYIKKN 420
  421 DGNTATCEDF NYAMEQAYKM KKADNSANLN QYLLWFSQSG TPHVSFKYNY DAEKKQYSIH 480
  481 VNQYTKPDEN QKEKKPLFIP ISVGLINPEN GKEMISQTTL ELTKESDTFV FNNIAVKPIP 540
  541 SLFRGFSAPV YIEDNLTDEE RILLLKYDSD AFVRYNSCTN IYMKQILMNY NEFLKAKNEK 600
  601 LESFNLTPVN AQFIDAIKYL LEDPHADAGF KSYIVSLPQD RYIINFVSNL DTDVLADTKE 660
  661 YIYKQIGDKL NDVYYKMFKS LEAKADDLTY FNDESHVDFD QMNMRTLRNT LLSLLSKAQY 720
  721 PNILNEIIEH SKSPYPSNWL TSLSVSAYFD KYFELYDKTY KLSKDDELLL QEWLKTVSRS 780
  781 DRKDIYEILK KLENEVLKDS KNPNDIRAVY LPFTNNLRRF HDISGKGYKL IAEVITKTDK 840
  841 FNPMVATQLC EPFKLWNKLD TKRQELMLNE MNTMLQEPNI SNNLKEYLLR LTNKL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2hpoA
Description:	No description for 2hpoA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits