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View Structure Prediction Details

Protein: gi|42568891, gi|...
Organism: Arabidopsis thaliana
Length: 255 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42568891, gi|....

Description E-value Query
Range
Subject
Range
gi|67633510 - gi|67633510|gb|AAY78679.1| hypothetical protein At2g03020 [Arabidopsis thaliana]
319.0 [0..1] [255..1]
gi|89257475 - gi|89257475|gb|ABD64966.1| hypothetical protein 25.t00003 [Brassica oleracea]
163.0 [0..5] [216..8]

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Predicted Domain #1
Region A:
Residues: [1-131]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMAVPVSAR PQSPEGFYAI NNQFQTNGPK GFSEIKILAN EDMFLRMDLP GVPDEGGLSV  60
   61 YHNRSQETVV VFAKAPKVHT HDSTERRYQT MTGIGCSCCA ISSITTHMSD GVFRVILSKT 120
  121 RIDPHRSPCT V

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 3.92
Match: 1gmeA
Description: Small heat shock protein
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [132-255]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LGCSGFREDL RGTDPNDPAL TGPVLQPHPL AFPQPTMAYE SKQLPNGKLF VRADMPGVPK  60
   61 ENFTVSVTNG RVKVTGQAPA VSHDSSGRFY SGDVAMLSTP VDIPSRRIKT IAKNGVIRLL 120
  121 IPPF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 23.154902
Match: 1gmeA
Description: Small heat shock protein
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
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