YRC Public Data Repository - Protein Structure Prediction

Protein:	LIN52_ONCMY
Organism:	Oncorhynchus mykiss
Length:	112 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LIN52_ONCMY.

Description	E-value	Query Range	Subject Range
gi\|109084300 - gi\|109084300\|ref\|XP_001093490.1\| PREDICTED: similar to lin-52 CG15929-PA [Macaca mulatta]	201.0	[0..1]	[112..37]
LIN52_MOUSE - Protein lin-52 homolog OS=Mus musculus GN=Lin52 PE=1 SV=1 ENSCJAT00000040119 - null gi\|149737369 - gi\|149737369\|ref\|XP_001490474.1\| PREDICTED: similar to lin-52 homolog [Equus caballus] gi\|151556047, gi... - gi\|156121277\|ref\|NP_001095786.1\| lin-52 homolog [Bos taurus], gi\|151556047\|gb\|AAI49966.1\| LIN52 prot... ENSOCUP000000150... - pep:novel chromosome:oryCun2:20:30816834:30931779:-1 gene:ENSOCUG00000017491 transcript:ENSOCUT00000... tr\|M3W5H3\|M3W5H3... - Lin-52 DREAM MuvB core complex component OS=Felis catus GN=LIN52 PE=4 SV=1 LIN52 - lin-52 homolog (C. elegans) ENSPTRT00000059408 - null	191.0	[0..1]	[112..5]
LIN52_TETNG - Protein lin-52 homolog OS=Tetraodon nigroviridis GN=lin52 PE=3 SV=1	190.0	[0..1]	[112..1]
gi\|76628400 - gi\|76628400\|ref\|XP_875524.1\| PREDICTED: hypothetical protein [Bos taurus] gi\|193785810, gi... - gi\|193785810\|dbj\|BAG51245.1\| unnamed protein product [Homo sapiens], gi\|119601567\|gb\|EAW81161.1\| chr...	190.0	[0..1]	[112..1]
gi\|109478508, gi... - ref\|XP_343090.1\| similar to CG15929-PA [Rattus norvegicus], gi\|109479660\|ref\|XP_001056671.1\| PREDICT...	188.0	[0..1]	[112..1]
LIN52_CHICK - Protein lin-52 homolog OS=Gallus gallus GN=LIN52 PE=1 SV=1	188.0	[0..1]	[112..1]
LIN52_PONAB - Protein lin-52 homolog OS=Pongo abelii GN=LIN52 PE=3 SV=1 LIN52_PONPY - Lin-52 homolog - Pongo pygmaeus (Orangutan)	182.0	[0..1]	[112..5]
gi\|163915898, gi... - gi\|62857655\|ref\|NP_001016782.1\| hypothetical protein LOC549536 [Xenopus (Silurana) tropicalis], gi\|1...	181.0	[0..1]	[112..1]
gi\|68387606 - gi\|68387606\|ref\|XP_692391.1\| PREDICTED: similar to rtp12.5 [Danio rerio]	175.0	[0..1]	[112..1]

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Predicted Domain #1

Region A:
Residues: [1-112]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASPNGGDDF ESSLLSFEKL DRASPDLWPE QLPGVADFAA SCKNPITNSP PKWMAELESE  60
   61 DIEMLKKLGS LTTANLMEKV KGLQNLAYQL GLEESREMTR GKFLNILERP KK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.801	a.78.1	Fatty acid responsive transcription factor FadR, C-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits