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View Structure Prediction Details

Protein: ISCAP_ARATH
Organism: Arabidopsis thaliana
Length: 180 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ISCAP_ARATH.

Description E-value Query
Range
Subject
Range
gi|126208405, gi... - gi|126208405|ref|YP_001053630.1| iron-binding protein IscA [Actinobacillus pleuropneumoniae L20], gi...
gi|190150256, gi... - gi|190150256|ref|YP_001968781.1| iron-binding protein IscA [Actinobacillus pleuropneumoniae serovar ...
gi|165976348, gi... - gi|165976348|ref|YP_001651941.1| iron-binding protein [Actinobacillus pleuropneumoniae serovar 3 str...
gi|32034039 - gi|32034039|ref|ZP_00134283.1| COG0316: Uncharacterized conserved protein [Actinobacillus pleuropneu...
174.0 [0..70] [178..1]

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Predicted Domain #1
Region A:
Residues: [1-180]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFATGITTS SNPTFLGLKI SNTSLRSVVS CNSISFPSLS YVNLNLNRRN RLSVRSASVP  60
   61 AAPAMEGLKP AISLSENALK HLSKMRSERG EDLCLRIGVK QGGCSGMSYT MDFENRANAR 120
  121 PDDSTIEYQG FTIVCDPKSM LFLFGMQLDY SDALIGGGFS FSNPNATQTC GCGKSFAAEM 180
  181 

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Detection Method: PSI-BLAST
Confidence: 40.69897
Match: 1s98A
Description: E.coli IscA crystal structure to 2.3 A
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
2 iron, 2 sulfur cluster binding 1.80248983815833 bayes_pls_golite062009
iron-sulfur cluster binding 1.47577968990921 bayes_pls_golite062009
metal cluster binding 1.47577968990921 bayes_pls_golite062009
binding 0.0602586837339399 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle