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View Structure Prediction Details

Protein: gi|30695110, gi|...
Organism: Arabidopsis thaliana
Length: 258 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30695110, gi|....

Description E-value Query
Range
Subject
Range
gi|2245118, gi|7... - pir||G71445 hypothetical protein - Arabidopsis thaliana, gi|7268512|emb|CAB78763.1| hypothetical pro...
389.0 [0..5] [258..1]

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Predicted Domain #1
Region A:
Residues: [1-192]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSISMALFSP PISSSLQNPN LIPKISTSLL STKRFSLISV PRASSDNGTT SPVVEIPKPA  60
   61 SVAVEEVPVK SPAESSSASE NGAVGGEATD SSTETVIKYQ NAKWVNGTWD LKQFEKDGKT 120
  121 DWDSVIVSEA KRRKWLEDNP ETTSNDELVV FDTSIIPWWA WMKRYHLPEA ELLNGRAAMI 180
  181 GFFMAYFVDS LT

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.36
Match: 1rwtA
Description: Crystal Structure of Spinach Major Light-harvesting complex at 2.72 Angstrom Resolution
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [193-258]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVGLVDQMGN FFCKTLLFVA VAGVLFIRKN EDLDKLKDLF DETTLYDKQW QAAWKEPDSS  60
   61 TVSSKK

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.27
Match: 2o011
Description: No description for 2o011 was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle