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View Structure Prediction Details

Protein: TLP11_ARATH
Organism: Arabidopsis thaliana
Length: 389 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TLP11_ARATH.

Description E-value Query
Range
Subject
Range
gi|37542296 - gi|37542296|gb|AAL03978.1| tubby-like protein 12 [Arabidopsis thaliana]
558.0 [0..10] [389..1]

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Predicted Domain #1
Region A:
Residues: [1-92]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLRSLILEM RSRPHRVVHD LAAAAAADST SVSSQDYRWS EIPEELLREI LIRVEAADGG  60
   61 GWPSRRSVVA CAGVCRGWRL LMNETVVVPE IS

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.85
Match: 2e31A
Description: No description for 2e31A was found.

Predicted Domain #2
Region A:
Residues: [93-389]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SKLTFPISLK QPGPRDSLVQ CFIKRNRITQ SYHLYLGLTN SLTDDGKFLL AACKLKHTTC  60
   61 TDYIISLRSD DMSRRSQAYV GKVRSNFLGT KFTVFDGNLL PSTGAAKLRK SRSYNPAKVS 120
  121 AKVPLGSYPV AHITYELNVL GSRGPRKMQC LMDTIPTSTM EPQGVASEPS EFPLLGTRST 180
  181 LSRSQSKPLR SSSSHLKETP LVLSNKTPRW HEQLRCWCLN FHGRVTVASV KNFQLVAAGA 240
  241 SCGSGTGMSP ERQSERIILQ FGKVGKDMFT MDYGYPISAF QAFAICLSSF ETRIACE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 106.0
Match: 1c8zA
Description: Transcriptional factor tubby, C-terminal domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle