YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|55585041
Organism:	SPECIES UNKNOWN
Length:	106 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|55585041.

Description	E-value	Query Range	Subject Range
gi\|55585039 - gb\|AAV53715.1\| transcription factor IIA gamma subunit [Oryza sativa (indica cultivar-group)] gi\|55585039 - gi\|55585039\|gb\|AAV53715.1\| transcription factor IIA gamma subunit [Oryza sativa (indica cultivar-gro...	169.0	[0..1]	[106..1]
T2AG_ARATH - Transcription initiation factor IIA subunit 2 OS=Arabidopsis thaliana GN=TFIIA-S PE=2 SV=2	169.0	[0..1]	[106..1]
gi\|74224980 - gi\|74224980\|dbj\|BAE38203.1\| unnamed protein product [Mus musculus]	167.0	[0..4]	[105..3]
gi\|71002444, gi\|... - gi\|71002444\|ref\|XP_755903.1\| transcription initiation factor iia small chain [Aspergillus fumigatus ... gi\|159129958 - gi\|159129958\|gb\|EDP55072.1\| transcription initiation factor iia small chain [Aspergillus fumigatus A...	166.0	[0..2]	[106..5]
gi\|115388223, gi... - gi\|115388223\|ref\|XP_001211617.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	165.0	[0..2]	[106..5]
gi\|83770333 - gi\|83770333\|dbj\|BAE60466.1\| unnamed protein product [Aspergillus oryzae] gi\|220697940, gi... - gi\|238488629\|ref\|XP_002375552.1\| transcription initiation factor iia small chain [Aspergillus flavus... gi\|169762810 - gi\|169762810\|ref\|XP_001727305.1\| hypothetical protein [Aspergillus oryzae RIB40]	164.0	[0..2]	[106..6]
gi\|240106338 - gi\|240106338\|gb\|EER24531.1\| transcription initiation factor IIA gamma chain, putative [Coccidioides ... gi\|90305297, gi\|... - gi\|90305297\|gb\|EAS34928.1\| conserved hypothetical protein [Coccidioides immitis RS], gi\|119191810\|re...	164.0	[0..2]	[106..5]
gi\|57108247 - gi\|57108247\|ref\|XP_535502.1\| PREDICTED: similar to general transcription factor Iia 2 isoform 1 [Can... CCDS10173.1_1 - null tr\|M3WHV3\|M3WHV3... - Transcription initiation factor IIA subunit 2 OS=Felis catus GN=GTF2A2 PE=3 SV=1 T2AG_MOUSE - Transcription initiation factor IIA subunit 2 OS=Mus musculus GN=Gtf2a2 PE=1 SV=2 T2AG_RAT - Transcription initiation factor IIA subunit 2 OS=Rattus norvegicus GN=Gtf2a2 PE=3 SV=1 gi\|109081344, gi... - gi\|109081344\|ref\|XP_001100320.1\| PREDICTED: similar to general transcription factor Iia 2 isoform 3 ... gi\|149691901 - gi\|149691901\|ref\|XP_001500046.1\| PREDICTED: similar to TFIIA small subunit [Equus caballus]	162.0	[0..4]	[105..3]
gi\|209730768, gi... - gi\|209736464\|gb\|ACI69101.1\| Transcription initiation factor IIA subunit 2 [Salmo salar], gi\|20973076... T2AG_ONCMY - Transcription initiation factor IIA subunit 2 OS=Oncorhynchus mykiss GN=gtf2a2 PE=3 SV=1	162.0	[0..4]	[105..3]
T2AG_EMENI - Transcription initiation factor IIA subunit 2 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / ... T2AG_EMENI - Transcription initiation factor IIA subunit 2 OS=Emericella nidulans GN=toa2 PE=3 SV=1	162.0	[0..2]	[106..5]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATFELYRRS TIGMCLTETL DEMVSSGTLS PELAIQVLVQ FDKSMTEALE NQVKSKVSIK  60
   61 GHLHTYRFCD NVWTFILTEA SFKNEETTEQ VGKVKIVACD SKLLSQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.69897
Match:	1nvpD
Description:	HUMAN TFIIA/TBP/DNA COMPLEX
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits