YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|21311767
Organism:	Plasmodium falciparum
Length:	487 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21311767.

Description	E-value	Query Range	Subject Range
COPD_RAT - Coatomer subunit delta OS=Rattus norvegicus GN=Arcn1 PE=2 SV=1	455.0	[0..1]	[483..1]
ARCN1 - archain 1 gi\|114640635 - gi\|114640635\|ref\|XP_508795.2\| PREDICTED: archain isoform 2 [Pan troglodytes]	455.0	[0..1]	[483..1]
COPD_PONPY - Coatomer subunit delta - Pongo pygmaeus (Orangutan) COPD_PONAB - Coatomer subunit delta OS=Pongo abelii GN=ARCN1 PE=2 SV=1	455.0	[0..1]	[483..1]
COPD_MOUSE - Coatomer subunit delta OS=Mus musculus GN=Arcn1 PE=1 SV=2 tr\|G3I5S7\|G3I5S7... - Coatomer subunit delta OS=Cricetulus griseus GN=I79_018833 PE=4 SV=1	454.0	[0..1]	[483..1]
gi\|109108874 - gi\|109108874\|ref\|XP_001098493.1\| PREDICTED: similar to archain isoform 2 [Macaca mulatta]	453.0	[0..1]	[483..1]
gi\|73954685 - gi\|73954685\|ref\|XP_536552.2\| PREDICTED: similar to archain isoform 1 [Canis familiaris]	451.0	[0..1]	[483..1]
COPD_BOVIN - Coatomer subunit delta OS=Bos taurus GN=ARCN1 PE=1 SV=1 gi\|1125641 - gi\|1125641\|emb\|CAA63941.1\| coat protein delta-cop [Bos primigenius]	451.0	[0..1]	[483..1]

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Predicted Domain #1

Region A:
Residues: [1-344]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVLSAVIST KSKILVSRQF RNISKCDLDS LTIPFHNLIE RERSDHTYIE TDKVRYVYQP  60
   61 LDNIYIFLIT NINSNIIEDL EIIKVLSQII QDICQGNINE STILKKCFTI IFYIDELIKN 120
  121 GVREIVNSNQ IKTYIEMESH EEKLQTIIRE NKEKEEKERR KFIASKLEKN RQKQSKVSSN 180
  181 SFLSNDLINN LEYTNNIDMY KTEEQDIIDE SFNTYKGMQL TSNKKENIRI LNVVEHKVDT 240
  241 KPHINVNSIF DKPINIIITE NIICTLSSEG TLCDLDIQGT FNLQINNHNY SKVIVELDNE 300
  301 YSEKAKIHPI LDKNKYNSNI LELKDKSKNF RINTIYPLLK WKIN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	82.221849
Match:	1w63M
Description:	AP1 clathrin adaptor core
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [345-487]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HINDSYIPLN ISCWPCEDNE STLLSLEIEN KRNNNDELIY DLNVNLMCPS AHKPQIISND  60
   61 KGIIEHDGVL LAWKVDELKN NQSCQIEMSI QANPESVFPF SVEAKSNMLA HKLNVLKVYD 120
  121 EDTKKDIEYE IKKNITYLFT INK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.39794
Match:	1i31A
Description:	Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits