YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|23508236, gi\|...
Organism:	Plasmodium falciparum 3D7
Length:	94 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|23508236, gi|....

Description	E-value	Query Range	Subject Range
gi\|7459948 - pir\|\|D71622 probable integral membrane protein PFB0120w - malaria parasite (Plasmodium falciparum) gi\|3845101, gi\|1... - gi\|3845101\|gb\|AAC71814.1\| early transcribed membrane protein 2, ETRAMP2 [Plasmodium falciparum 3D7],...	107.0	[0..1]	[94..1]
gi\|56499765, gi\|... - gi\|56499765\|emb\|CAH93814.1\| hypothetical protein PB100384.00.0 [Plasmodium berghei], gi\|21322695\|emb... gi\|68074379 - gi\|68074379\|ref\|XP_679104.1\| hypothetical protein [Plasmodium berghei strain ANKA]	101.0	[0..1]	[93..1]
gi\|23491389 - gi\|23491389\|gb\|EAA22932.1\| hypothetical protein [Plasmodium yoelii yoelii] gi\|83317915 - gi\|83317915\|ref\|XP_731367.1\| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]	100.0	[0..1]	[94..1]
gi\|21322697 - gi\|21322697\|emb\|CAD12773.1\| small exported protein 2 [Plasmodium berghei]	95.0	[0..1]	[92..1]

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Predicted Domain #1

Region A:
Residues: [1-94]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKITKIFYFF AALLALNFIA PNYFNGYVEA KKALTPAEKK KRNQQIMLIS GITSALALLI  60
   61 GAGVGLGIHY KNKNNGDEKK DKAGAKTITA TPKN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	37.0
Match:	PF09716.1
Description:	No description for PF09716.1 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits