YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|11559500
Organism:	Plasmodium falciparum
Length:	344 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11559500.

Description	E-value	Query Range	Subject Range
RFCS_METMP - Replication factor C small subunit OS=Methanococcus maripaludis GN=rfcS PE=3 SV=1 RFCS_METMP - Replication factor C small subunit OS=Methanococcus maripaludis (strain S2 / LL) GN=rfcS PE=3 SV=1	213.0	[0..13]	[327..3]
RFCS_ARCFU - Replication factor C small subunit OS=Archaeoglobus fulgidus GN=rfcS PE=1 SV=1 RFCS_ARCFU - Replication factor C small subunit OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 /...	212.0	[0..10]	[333..2]
gi\|15988297, gi\|... - gi\|15988302\|pdb\|1IQP\|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From Pyrococcus ...	211.0	[0..1]	[333..1]
gi\|82540400 - gi\|82540400\|ref\|XP_724521.1\| replication factor C3 [Plasmodium yoelii yoelii str. 17XNL] gi\|23479189 - gi\|23479189\|gb\|EAA16086.1\| replication factor C3 [Plasmodium yoelii yoelii]	210.0	[0..1]	[340..1]
gi\|49076552, gi\|... - gi\|71021079\|ref\|XP_760770.1\| hypothetical protein UM04623.1 [Ustilago maydis 521], ref\|XP_402238.1\| ...	207.0	[0..8]	[327..17]
gi\|55379214, gi\|... - gi\|55379214\|ref\|YP_137064.1\| replication factor C small subunit [Haloarcula marismortui ATCC 43049],...	206.0	[0..11]	[329..32]
RFCS_HALMA - Replication factor C small subunit OS=Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 896... RFCS_HALMA - Replication factor C small subunit OS=Haloarcula marismortui GN=rfcS PE=3 SV=2	206.0	[0..2]	[329..3]
gi\|109497454 - gi\|109497454\|ref\|XP_001080107.1\| PREDICTED: similar to Activator 1 36 kDa subunit (Replication facto...	204.0	[0..2]	[331..177]
gi\|49645539, gi\|... - gi\|50543016\|ref\|XP_499674.1\| YALI0A02068p [Yarrowia lipolytica], gi\|49645539\|emb\|CAG83597.1\| unnamed... gi\|49645539 - gi\|49645539\|emb\|CAG83597.1\| YALI0A02068p [Yarrowia lipolytica]	204.0	[0..14]	[332..30]
gi\|66812244, gi\|... - gi\|66812244\|ref\|XP_640301.1\| replication factor C subunit [Dictyostelium discoideum AX4], gi\|6046831... RFC5_DICDI - Probable replication factor C subunit 5 OS=Dictyostelium discoideum GN=rfc5 PE=3 SV=1	203.0	[0..6]	[337..17]

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Predicted Domain #1

Region A:
Residues: [1-344]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEVEQQRGS ELTPWVEKYR PNVLNDIISH EQVISTIKRF VQKGELPHLL LHGPPGTGKT  60
   61 STILAVCKEL YGDKRSSFVL ELNASDDRGI NVIRDQIKTF AESKNHYTTC EKTTLKLIIL 120
  121 DEADHMTYPA QNAMRRIMEN YAKNVRFCLL CNYVNKITPA IQSRCTAFRF APLKKEYMKN 180
  181 KALDIAKSEN VNLTEGGIDS LIRVGHGDMR RILNCLQVVS LSHKNLVIDE NVILSTLDIP 240
  241 LPSETKKILE YFTKGSIKES YEFVSNLQYD KGYSTKDIMM CLYESVLTYD FPDSAFCLLL 300
  301 KNFGEIEERC SSGASEQITL SALISAFVEF RTELFKLKYD MSNI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.0
Match:	2chqA
Description:	No description for 2chqA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits