YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|20429031
Organism:	Plasmodium falciparum
Length:	451 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20429031.

Description	E-value	Query Range	Subject Range
gi\|21591788 - gi\|21591788\|gb\|AAL73120.1\| delta-aminolevulinic acid dehydratase precursor [Plasmodium falciparum]	623.0	[0..1]	[451..1]
gi\|86607365, gi\|... - gi\|86607365\|ref\|YP_476128.1\| delta-aminolevulinic acid dehydratase [Synechococcus sp. JA-3-3Ab], gi\|... gi\|86607365 - gi\|86607365\|ref\|YP_476128.1\| delta-aminolevulinic acid dehydratase [Cyanobacteria bacterium Yellowst...	546.0	[0..95]	[429..4]
gi\|13560098 - gi\|13560098\|emb\|CAC36148.1\| ALA dehydratase [Fucus vesiculosus]	543.0	[0..89]	[429..93]
gi\|86609891 - gi\|86609891\|ref\|YP_478653.1\| delta-aminolevulinic acid dehydratase [Cyanobacteria bacterium Yellowst... gi\|86558433, gi\|... - gi\|86609891\|ref\|YP_478653.1\| delta-aminolevulinic acid dehydratase [Synechococcus sp. JA-2-3B'a(2-13...	541.0	[0..95]	[429..4]
gi\|119768843, gi... - gi\|68546484\|ref\|ZP_00586031.1\| Porphobilinogen synthase [Shewanella amazonensis SB2B], gi\|68515898\|g...	538.0	[0..98]	[430..11]
gi\|13560254 - gi\|13560254\|emb\|CAC36186.1\| ALA dehydratase [Odontella sinensis]	537.0	[0..90]	[428..81]
gi\|119944101, gi... - gi\|119944101\|ref\|YP_941781.1\| delta-aminolevulinic acid dehydratase [Psychromonas ingrahamii 37], gi...	536.0	[0..98]	[429..10]
gi\|111283335, gi... - gi\|111616409\|ref\|ZP_01403441.1\| Porphobilinogen synthase [Acidovorax avenae subsp. citrulli AAC00-1]...	536.0	[0..83]	[429..120]
gi\|83573008, gi\|... - gi\|83590094\|ref\|YP_430103.1\| delta-aminolevulinic acid dehydratase [Moorella thermoacetica ATCC 3907...	535.0	[0..99]	[428..8]
gi\|86749740, gi\|... - gi\|86749740\|ref\|YP_486236.1\| delta-aminolevulinic acid dehydratase [Rhodopseudomonas palustris HaA2]...	535.0	[0..94]	[430..23]

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Predicted Domain #1

Region A:
Residues: [1-95]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKSDVVLLL YILIINLICC LNGNSKKRAY ILNTPKSSNC KRSSFRRWNN PVNNNNSQIL  60
   61 SKNEGSIEDV YNKKISGRCN IKNFSKDINN NIYIE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [96-451]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TNRRERRIKR NKYLLSLYNN TNIKTSNFIY PLFIHEEDVE KKHTQLEGIY TYNVDGIIKE  60
   61 IEECIKLNIH HFMFFPVIRE ENKTVYCEES YNENSYFCKT ISRIKEKFSD DIIVYTDVAL 120
  121 DPYNIYGHDG IYDDNKKEIL NDITVHTLVK QSLCLAKSGA DVVCPSDSMD KRIELIRKNL 180
  181 DFHNFRDILI LSYTCKYSSS MYKPFRSILN SNILKNFVKN KQSYQHDFNS YMDLNNVDKH 240
  241 IIEGADIIMV KPSMFYLDII HKIKNRIKDD VQIPIAVYNV SGEYMMIKNY VKYLNEDINY 300
  301 ENEIITELFK SYLRAGANII ITYFAKQYGL YMKKLYDKNI IIDDNSNNNF NIELTL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	150.0
Match:	1w5oA
Description:	Stepwise introduction of zinc binding site into porphobilinogen synthase of Pseudomonas aeruginosa (mutantions A129C, D131C and D139C)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits