YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|1430925
Organism:	Plasmodium falciparum
Length:	452 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|1430925.

Description	E-value	Query Range	Subject Range
gi\|82596174 - gi\|82596174\|ref\|XP_726153.1\| DNA primase small subunit [Plasmodium yoelii yoelii str. 17XNL] gi\|23481440 - gi\|23481440\|gb\|EAA17718.1\| DNA primase small subunit [Plasmodium yoelii yoelii]	530.0	[0..3]	[429..1]
gi\|62898343 - gi\|62898343\|dbj\|BAD97111.1\| DNA primase small subunit, 49kDa variant [Homo sapiens]	493.0	[0..8]	[445..2]
PRI1_MOUSE - DNA primase small subunit OS=Mus musculus GN=Prim1 PE=1 SV=1	492.0	[0..8]	[445..2]
gi\|3676248 - gi\|3676248\|emb\|CAA09723.1\| DNA polymerase alpha subunit IV (primase) [Rattus norvegicus]	487.0	[0..8]	[443..4]
gi\|194667228, gi... - gi\|76618668\|ref\|XP_582661.2\| PREDICTED: similar to DNA primase small subunit (DNA primase 49 kDa sub...	487.0	[0..8]	[445..2]
gi\|46123923, gi\|... - gi\|46123923\|ref\|XP_386515.1\| hypothetical protein FG06339.1 [Gibberella zeae PH-1], gi\|42552113\|gb\|E...	487.0	[0..13]	[449..88]
gi\|85093187 - gi\|85093187\|ref\|XP_959645.1\| DNA primase small subunit [Neurospora crassa OR74A] gi\|28921091, gi\|... - gi\|32421129\|ref\|XP_331008.1\| hypothetical protein [Neurospora crassa], gi\|28921091\|gb\|EAA30409.1\| DN...	484.0	[0..1]	[439..141]

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Predicted Domain #1

Region A:
Residues: [1-452]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKMEIVGDIK DSIVNENDLI FYYRSLCPIN DLYNWLNYKN DIKGKYTKLN DPHFFSKREF  60
   61 SFTCKKSDQG KEEIYIRWLS FSNPEEFKNK LLSDLVPIKF DIGAIYNFPV SQKDQKGDIF 120
  121 LPVQKELIFD IDMNDYDDIR TCCTDKKVCK LCWKFLTVAI VLLDTALRED FSFEHILWVY 180
  181 SGRRGIHCWV ADESCRYYTT DARAALADYL NILSGSDTKK KKVSIWGKDK YPMFERAFDI 240
  241 CYKYFDVLME EQDFFKKGSP HVQKLIDYLP YASGKVTDPL KAMKLNELKE YINNNNFNSR 300
  301 EIFEKFSSIY NFLTPSNYFK RKNVSGNINM PSFVKEIVFH FTYPRLDINV SKEINHLLKS 360
  361 PFCIHNSTGR VCVPLDIKNI NNFNPQSVPT LKLLREQFDD PKNSHIEAEN RTSLKPYIDY 420
  421 FRRHFIENIL LSCVEKKKRL NENSKYVDYN NI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	71.0
Match:	1g71A
Description:	DNA primase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits