YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|23497431, gi\|...
Organism:	Plasmodium falciparum 3D7
Length:	335 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|23497431, gi|....

Description	E-value	Query Range	Subject Range
gi\|23489757 - gi\|23489757\|gb\|EAA21690.1\| unknown protein [Plasmodium yoelii yoelii] gi\|83286353 - gi\|83286353\|ref\|XP_730125.1\| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]	493.0	[0..1]	[335..1]
gi\|68074611 - gi\|68074611\|ref\|XP_679222.1\| translocation protein sec62 [Plasmodium berghei strain ANKA] gi\|56499915 - gi\|56499915\|emb\|CAH98034.1\| translocation protein sec62, putative [Plasmodium berghei]	476.0	[0..1]	[333..1]
gi\|66357796 - gi\|66357796\|ref\|XP_626076.1\| conserved protein having 3 transmembrane domains and possible ER retent... gi\|46227169 - gi\|46227169\|gb\|EAK88119.1\| conserved protein having 3 transmembrane domains and possible ER retentio...	423.0	[0..6]	[335..18]
gi\|67594907 - gi\|67594907\|ref\|XP_665943.1\| hypothetical protein [Cryptosporidium hominis TU502] gi\|54656822 - gi\|54656822\|gb\|EAL35713.1\| hypothetical protein Chro.50257 [Cryptosporidium hominis]	423.0	[0..12]	[335..26]
gi\|68351915 - gi\|68351915\|gb\|EAN32676.1\| translocation protein sec62, putative [Theileria parva] gi\|71030634 - gi\|71030634\|ref\|XP_764959.1\| translocation protein sec62 [Theileria parva strain Muguga]	295.0	[0..10]	[335..6]
gi\|28924204, gi\|... - gi\|32411415\|ref\|XP_326188.1\| hypothetical protein [Neurospora crassa], gi\|28924204\|gb\|EAA33359.1\| co... gi\|85108529 - gi\|85108529\|ref\|XP_962595.1\| hypothetical protein NCU06333 [Neurospora crassa OR74A]	285.0	[0..2]	[214..117]
gi\|67540198, gi\|... - gi\|67540198\|ref\|XP_663873.1\| hypothetical protein AN6269.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	283.0	[0..2]	[218..118]
gi\|95007198 - gi\|95007198\|emb\|CAJ20419.1\| translocation protein sec62, putative [Toxoplasma gondii RH] gi\|95007198\|emb\|... - translocation protein sec62, putative [Toxoplasma gondii RH] gi\|221482625 - gi\|221482625\|gb\|EEE20963.1\| translocation protein Sec62, putative [Toxoplasma gondii GT1] gi\|221503181 - gi\|221503181\|gb\|EEE28887.1\| translocation protein Sec62, putative [Toxoplasma gondii VEG]	278.0	[0..13]	[335..26]
gi\|39975803, gi\|... - gi\|39975803\|ref\|XP_369292.1\| hypothetical protein MGG_06172 [Magnaporthe grisea 70-15], gb\|EAA53044....	267.0	[0..2]	[214..102]
gi\|65302485 - gi\|65302485\|emb\|CAI74592.1\| translocation protein (SEC62 homologue), putative [Theileria annulata] gi\|84995204 - gi\|84995204\|ref\|XP_952324.1\| translocation protein (SEC62 homologue) [Theileria annulata strain Anka...	263.0	[0..3]	[335..16]

Back

Predicted Domain #1

Region A:
Residues: [1-218]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGVLKCAFN AGVKVKSAAE VGKRAVEYFR GDDFVNFLST NGEMLKKKFP NLFINRNLSD  60
   61 MKEIEEFADM FIQKGYIYKA QYKPIKGINE KDENGVYKRP KWPKRLIMTS KQNFDKTSFY 120
  121 ILVHERNKKL QYFMLISLIS IVLICCMFPV WPLRLKLALW HISVAFLTLI SIIIVGRLVA 180
  181 FIFFWFFGVD YWIFPNLFDE ECNVVESFLP LQSWVYRN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	5.040959
Match:	PF03839.4
Description:	No description for PF03839.4 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.576	N/A	N/A	a.73.1	Retrovirus capsid protein, N-terminal core domain
View	Download	0.565	N/A	N/A	a.73.1	Retrovirus capsid protein, N-terminal core domain
View	Download	0.510	N/A	N/A	a.1.1	Globin-like
View	Download	0.475	N/A	N/A	a.1.1	Globin-like
View	Download	0.432	N/A	N/A	d.58.26	GHMP Kinase, C-terminal domain

Predicted Domain #2

Region A:
Residues: [219-335]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DTWFLFVARM CTAVLLAIAI QQLGKTHSIA DIRNFATQSY IDIIEWGNKK LAASPENVSM  60
   61 YKSIDSKATF EGNVDDDDTV YDENEENYDC LKKCGFTSFE ELVRKCFLKC ECMEVII

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.237	d.93.1	SH2 domain
View	Download	0.209	d.26.1	FKBP-like
View	Download	0.202	d.93.1	SH2 domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits