YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|23497354, gi\|...
Organism:	Plasmodium falciparum 3D7
Length:	510 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|23497354, gi|....

Description	E-value	Query Range	Subject Range
gi\|23485755 - gi\|23485755\|gb\|EAA20557.1\| glutamate dehydrogenase [Plasmodium yoelii yoelii] gi\|82915173 - gi\|82915173\|ref\|XP_728992.1\| glutamate dehydrogenase [Plasmodium yoelii yoelii str. 17XNL]	511.0	[0..49]	[508..742]
gi\|86131236, gi\|... - gi\|86131236\|ref\|ZP_01049835.1\| glutamate dehydrogenase [Cellulophaga sp. MED134], gi\|85818647\|gb\|EAQ...	511.0	[0..68]	[510..3]
gi\|56499621 - gi\|56499621\|emb\|CAH96328.1\| glutamate dehydrogenase, putative [Plasmodium berghei] gi\|68074157 - gi\|68074157\|ref\|XP_678993.1\| glutamate dehydrogenase [Plasmodium berghei strain ANKA]	509.0	[0..43]	[508..13]
gi\|56523292 - gi\|56523292\|emb\|CAH79883.1\| glutamate dehydrogenase, putative [Plasmodium chabaudi chabaudi] gi\|70948291 - gi\|70948291\|ref\|XP_743678.1\| glutamate dehydrogenase [Plasmodium chabaudi chabaudi]	509.0	[0..49]	[508..2]
gi\|86134770, gi\|... - gi\|86134770\|ref\|ZP_01053352.1\| glutamate dehydrogenase [Polaribacter sp. MED152], gi\|85821633\|gb\|EAQ...	506.0	[0..65]	[510..4]
gi\|89889970, gi\|... - gi\|89889970\|ref\|ZP_01201481.1\| NAD(P)-specific glutamate dehydrogenase [Flavobacteria bacterium BBFL...	502.0	[0..70]	[510..5]
gi\|83855924, gi\|... - gi\|83855924\|ref\|ZP_00949453.1\| glutamate dehydrogenase [Croceibacter atlanticus HTCC2559], gi\|838497...	501.0	[0..67]	[510..2]
gi\|88785615, gi\|... - gi\|88804736\|ref\|ZP_01120256.1\| glutamate dehydrogenase [Robiginitalea biformata HTCC2501], gi\|887856...	500.0	[0..68]	[510..6]
gi\|68346947, gi\|... - gi\|70732648\|ref\|YP_262411.1\| glutamate dehydrogenase [Pseudomonas fluorescens Pf-5], gi\|68346947\|gb\|...	495.0	[0..45]	[510..3]
gi\|48859402, gi\|... - gi\|67875162\|ref\|ZP_00504647.1\| Glutamate dehydrogenase (NADP+) [Clostridium thermocellum ATCC 27405]...	495.0	[0..70]	[509..4]

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Predicted Domain #1

Region A:
Residues: [1-510]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILYSCVVCF IVFVFHVKAY SKNKVLKYAK PGFITNEIDI GAYAKRRGKS RLGSLHNYGY  60
   61 TSTKSVDNQI EELREKVVSK NKNEPEFLQA FEEVLSCLKP VFKKDNVYIG VLENIAEPER 120
  121 VIQFRVPWIN DKGEHKMNRG FRVQYNSVLG PYKGGLRFHP TVNLSVIKFL GFEQIFKNSL 180
  181 TTLPMGGGKG GSDFDPKGKS ENEILKFCQS FMTNLFRYIG PNTDVPAGDI GVGGREIGYL 240
  241 FGQYKKLKNS FEGVLTGKNI KWGGSNIRAE ATGYGVVYFA ENVLKDLNDN LENKKCLVSG 300
  301 SGNVAQYLVE KLIEKGAIVL TMSDSNGYIL EPNGFTKEQL NYIMDIKNNQ RLRLKEYLKY 360
  361 SKTAKYFENQ KPWNIPCDIA FPCATQNEIN ENDADLFIQN KCKMIVEGAN MPTHIKALHK 420
  421 LKQNNIILCP SKAANAGGVA VSGLEMSQNS MRLQWTHQET DMKLQNIMKS IYEQCHNTSK 480
  481 IYLNESDLVA GANIAGFLKV ADSFLEQGGL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	131.0
Match:	2bmaA
Description:	The crystal structure of Plasmodium falciparum glutamate dehydrogenase, a putative target for novel antimalarial drugs
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits