YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|124808839, gi...
Organism:	Plasmodium falciparum 3D7
Length:	88 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|124808839, gi....

Description	E-value	Query Range	Subject Range
gi\|56522690 - gi\|56522690\|emb\|CAH81864.1\| ubiquinol-cytochrome c reductase hinge protein, putative [Plasmodium cha... gi\|70947284 - gi\|70947284\|ref\|XP_743273.1\| ubiquinol-cytochrome c reductase hinge protein, [Plasmodium chabaudi ch...	119.0	[0..1]	[88..1]
gi\|23484814 - gi\|23484814\|gb\|EAA20016.1\| ubiquinol-cytochrome c reductase complex 7.8 kDa protein [Plasmodium yoel... gi\|56496460 - gi\|56496460\|emb\|CAH97923.1\| ubiquinol-cytochrome c reductase hinge protein, putative [Plasmodium ber... gi\|82794475 - gi\|82794475\|ref\|XP_728451.1\| ubiquinol-cytochrome c reductase complex 7.8 kDa protein [Plasmodium yo... gi\|68069499 - gi\|68069499\|ref\|XP_676661.1\| ubiquinol-cytochrome c reductase hinge protein, [Plasmodium berghei str...	118.0	[0..1]	[87..1]
gi\|108872956, gi... - gi\|157127313\|ref\|XP_001654918.1\| hypothetical protein AaeL_AAEL010801 [Aedes aegypti], gi\|108872956\|...	99.0	[0..12]	[87..31]
gi\|15218058, gi\|... - gi\|227204459\|dbj\|BAH57081.1\| AT1G15120 [Arabidopsis thaliana], gi\|15218058\|ref\|NP_172964.1\| ubiquino...	98.0	[0..23]	[87..4]
gi\|114556340 - gi\|114556340\|ref\|XP_001160694.1\| PREDICTED: similar to Ubiquinol-cytochrome c reductase hinge protei...	97.0	[0..27]	[87..114]
CG30354-PA, FBpp... - This gene is referred to in FlyBase by the symbol Dmel\CG30354 (CG30354, FBgn0050354). It is a prote... gi\|220951348 - gi\|220951348\|gb\|ACL88217.1\| CG30354-PA [synthetic construct]	97.0	[0..11]	[87..7]
AGAP002245-PA - Cytochrome b-c1 complex subunit 6, mitochondrial\|protein_coding\|2R:18083401:18083756:-1\|gene:AGAP002... gi\|116132786, gi... - gi\|119112893\|ref\|XP_307940.3\| ENSANGP00000021887 [Anopheles gambiae str. PEST], gi\|116132786\|gb\|EAA0...	96.0	[0..5]	[87..6]

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Predicted Domain #1

Region A:
Residues: [1-88]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYPYYTEFF VRYPKFKERD EKDRTVDPRI ELEKKCAVKC VRPVNEYQNC VSRVRARTDN  60
   61 KGNCLGQYEE LYICIDHCVA KDLFNYLA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.69897
Match:	1bccH
Description:	Nonheme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits