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View Structure Prediction Details

Protein: gi|23508203, gi|...
Organism: Plasmodium falciparum 3D7
Length: 372 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|23508203, gi|....

Description E-value Query
Range
Subject
Range
gi|124507289, gi... - gi|23613887|ref|NP_704908.1| rifin [Plasmodium falciparum 3D7], gi|23613002|ref|NP_704541.1| RIFIN [...
455.0 [0..1] [372..1]

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Predicted Domain #1
Region A:
Residues: [1-223]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFSYFNILL FSIPLNILIN DQRNHKSTTH HTLKIPITRL LCECELYSPD NYDNDAEMKR  60
   61 VMQQFEDRTS QRFHEYDERM QSKRMQCKDR CDKEIQKIIL KDKIEKELSQ HLSTLETNID 120
  121 TNDIPTCVCE KSLADKVEKG CLRCGYGLGT VAPTVGLIGA VAVNELKKAA MAIAIKDAIA 180
  181 EGLVAGETAR IQASIKAVIL GIKSKFRIDT LGGEVLESII TAQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [224-372]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KYDDVSLISE SIYMQYQSTC LPQYVGHGAD LSKPICHTVY TLDFVQGKVH VPGSLQGSIK  60
   61 KALEKIVAEA KSNAVSETAN VTTRQTAVFE SRNIAAVDAT YASYQTAIVA SVVAILVIVL 120
  121 VMLIIYLILR YRRKKKMKKK LQYIKLLKE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.591 N/A N/A a.47.2 t-snare proteins
View Download 0.588 N/A N/A a.7.1 Spectrin repeat
View Download 0.530 N/A N/A a.60.9 lambda integrase-like, N-terminal domain
View Download 0.481 N/A N/A a.24.17 Group V grass pollen allergen
View Download 0.461 N/A N/A a.47.2 t-snare proteins


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle