YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|124802471, gi...
Organism:	Plasmodium falciparum 3D7
Length:	1005 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|124802471, gi....

Description	E-value	Query Range	Subject Range
gi\|68388302 - gi\|68388302\|ref\|XP_696268.1\| PREDICTED: similar to slow myosin heavy chain 1 [Danio rerio]	374.0	[0..87]	[863..2136]
gi\|109488222 - gi\|109488222\|ref\|XP_001077587.1\| PREDICTED: similar to Myosin heavy chain, skeletal muscle, adult 2 ...	346.0	[0..88]	[1004..1129]
MYH1_BOVIN - Myosin-1 OS=Bos taurus GN=MYH1 PE=2 SV=2	334.0	[0..88]	[864..1136]
MYH2_HORSE - Myosin-2 OS=Equus caballus GN=MYH2 PE=2 SV=1	334.0	[0..88]	[864..1135]
MYH2_PIG - Myosin-2 OS=Sus scrofa GN=MYH2 PE=2 SV=1 gi\|55741490 - ref\|NP_999301.1\| myosin heavy chain 2a [Sus scrofa]	334.0	[0..88]	[864..1137]

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Predicted Domain #1

Region A:
Residues: [1-427]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNIVLFYIF NFIVFLQWVP LSNPYISVFF RLYIYIYIYF FILSIIYIYI YIYIYIYFHF  60
   61 VYYIYIYIFF FFFFFFFFHF TFVMMIIRGE LPSKGYLSPS DKKCANTFLQ QEEEDEEVNK 120
  121 EFYNKIGDII EYIDTSRNKI LLIQSENLTK RKEVTNEYDF LKKVGEVCKK SCDYYFDTNI 180
  181 KYHEACENFS ILFKIFYDSL IYIVKKNEEA DHVQTILQQI EDNISMEKLE KEKMNILLKD 240
  241 KLNELEKNVF FMKNESVNLN NKIQELDYQI NQHKESFDSF STLTNLNCEK LIVLQNQYNS 300
  301 LTNKRESITR SIAKKGDTME MCKYNFVQQK KKLEEEKNEL MVKEKEYTHK IEHLEICRQE 360
  361 ICSNNTRLQS QVQFVESQVN SQEYYEKIIE EGLSNSMDTK KEIEENLSTH KNEINKIIEK 420
  421 IKKCKLE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.221849
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [428-715]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKKGNEKYNE LQKKFGELQK ELEKKENDAL EFKKKYNDIN EHVKNEEYTL NQYILQDLKK  60
   61 KKNLLQEEIT NYKEEIKTLI LKEKEKKLNN HQYNNINHID IKDDIDTYID SVETNLLIQE 120
  121 LEYILNEMKK KIKEEEEEIW KKNRELQNEN IKINELQNKI NEEYNKEKEI NSEVQVIQEK 180
  181 LIILDNKEKQ NQQNINHLKE EINSMELKNN KNKEEIQHLE NKINENKQKI ENHILQIHKE 240
  241 YEQKNKILYE TNNFYTDINS KEKKQLKDDI DTYTQQIKIQ YDLQKEKI

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.96
Match:	1c1gA
Description:	Tropomyosin
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [716-1005]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EKQEKQKVDE EFKYLDQEIK KKDDLLNYYK ELLNKQENNT NVNIINYAQP DNEQPTQEIN  60
   61 PYEDIKENRK SIQNKKMNSS NTYNNFNKYK LYTMPDQYKI GYFDVTSPND MRRKSIKYQN 120
  121 RSVKSPHITR LLEKIKNRKE CHTLVASKKT PLTQANSINE KDNNRKSSNH KALTKTKKNQ 180
  181 NDNSFDLFQH FEAEEILNRI KNHKGVIGIL VVNSEGLIIK STFDQQQSDL HASLLTQLSK 240
  241 KARDVIRELD PQNDINFLRL RSKKHEIMIA PDKDYTLIVV QDPYADKEKS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.154902
Match:	2tmaA
Description:	Tropomyosin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits