YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|7494417
Organism: Plasmodium falciparum
Length: 368 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7494417.

Description E-value Query
Range
Subject
Range
gi|124505671, gi... - gi|23613376|ref|NP_703220.1| RIFIN [Plasmodium falciparum 3D7], gi|23510592|emb|CAD48976.1| rifin [P...
472.0 [0..1] [368..1]
gi|23305099 - gi|23305099|gb|AAN17004.1|AF483823_1 variant surface antigen rifin [Plasmodium falciparum]
444.0 [0..1] [352..1]

Back

Predicted Domain #1
Region A:
Residues: [1-146]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVHYMNILL FALPLNILEH NERDHNNTTL HTSITRSLCE FELYEPANYD NDQEMKEVMQ  60
   61 QFEVRTSQRF HEYDESLQSK RKQCKDQCDK EIQKIILKDK LEKHMAQQLS TLETRITTDD 120
  121 IPTCVCEKSM ADKVEKGCLR CGCILG

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.95
Match: 1jocA
Description: Eea1; Eea1 homodimerisation domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [147-368]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AAMPELGSVG GSLLYALNTW KPVALKAAIA AANKAGMAAG IKAGDAAGMN VVIVQLGKWG  60
   61 INEFCPEIFE SILKINHYSK LKDFASAIVA EHDKICAITT SGENSMCLPF DIALGLSDAK 120
  121 GTPIGPPASQ AIPKMMNQLV GKAKGTADFM ANKVNSETYS KIITKQADLI EAGFNSCTTS 180
  181 IYASIIVILI IVLIMVIIYL ILRYRRKKKM KKKLQYIKLL EE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle