YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7494439
Organism:	Plasmodium falciparum
Length:	101 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7494439.

Description	E-value	Query Range	Subject Range
gi\|115463137, gi... - gi\|115463137\|ref\|NP_001055168.1\| Os05g0314100 [Oryza sativa (japonica cultivar-group)], gi\|113578719...	108.0	[0..1]	[101..36]
gi\|28466881, gi\|... - pir\|\|T00420 probable small nuclear ribonucleoprotein D2 [imported] - Arabidopsis thaliana, gi\|73627...	104.0	[0..1]	[101..5]
gi\|5870130 - gi\|5870130\|gb\|AAD54489.1\| small nuclear ribonucleoprotein B' [Homo sapiens]	104.0	[0..23]	[101..8]
gi\|125775085, gi... - gi\|54638535\|gb\|EAL27937.1\| GA16073-PA [Drosophila pseudoobscura], gi\|125775085\|ref\|XP_001358794.1\| G...	103.0	[0..1]	[101..1]
gi\|47211209 - gi\|47211209\|emb\|CAF90166.1\| unnamed protein product [Tetraodon nigroviridis]	102.0	[0..23]	[101..15]
gi\|112305, gi\|206694 - gi\|206694\|gb\|AAA42059.1\| snRNP-associated polypeptide N, pir\|\|A35448 small nuclear ribonucleoprotein...	102.0	[0..23]	[101..8]
gi\|86438323 - gi\|86438323\|gb\|AAI12635.1\| SNRPB protein [Bos taurus]	102.0	[0..23]	[101..8]

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Predicted Domain #1

Region A:
Residues: [1-101]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSEVTIEEN RDNPEDGPLG LLSECVKDNA QVLINCRNNR KILGRVKAFD RHCNLLLTGV  60
   61 REIWVEVVKD KKKKKKINKD RYISILFLRG DSVILILRNP K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.154902
Match:	1b34B
Description:	D2 core SNRNP protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.1015463487552	bayes_pls_golite062009
nucleic acid binding	0.30591269457386	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: