YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7494155
Organism:	Plasmodium falciparum
Length:	141 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7494155.

Description	E-value	Query Range	Subject Range
gi\|74007149 - gi\|74007149\|ref\|XP_854230.1\| PREDICTED: similar to Adapter-related protein complex 1 sigma 1B subuni...	178.0	[0..2]	[140..190]
gi\|109101341 - gi\|109101341\|ref\|XP_001098858.1\| PREDICTED: similar to adaptor-related protein complex AP-1, sigma 3...	169.0	[0..1]	[140..75]
gi\|89042891 - gi\|89042891\|ref\|XP_944818.1\| PREDICTED: similar to adaptor-related protein complex 1 sigma 2 subunit...	169.0	[0..2]	[140..48]
gi\|38109895, gi\|... - gi\|39951407\|ref\|XP_363420.1\| hypothetical protein MG01346.4 [Magnaporthe grisea 70-15], gb\|EAA55695....	167.0	[0..2]	[140..3]
gi\|76610718 - gi\|76610718\|ref\|XP_612669.2\| PREDICTED: similar to adaptor-related protein complex AP-1, sigma 3 iso...	167.0	[0..1]	[140..37]
gi\|114601211 - gi\|114601211\|ref\|XP_001148407.1\| PREDICTED: similar to clathrin coat assembly protein-like isoform 2...	160.0	[0..1]	[140..101]
gi\|108711414 - gi\|108711414\|gb\|ABF99209.1\| Adapter-related protein complex 1 sigma 1B subunit, putative, expressed ...	159.0	[0..1]	[141..1]
gi\|1762309 - gi\|1762309\|gb\|AAB39510.1\| AP-1 Golgi-related complex component; clathrin coated vesicles; clathrin a...	158.0	[0..1]	[141..1]

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Predicted Domain #1

Region A:
Residues: [1-141]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNFILLQNR QGKTRFSKWY INCNEKKQKK IERDINKILI NRSRSYANIF VYENFKIVYR  60
   61 LYAGLYFVVC IENENELYIL EFIHFMAQLL DTFFTNVCEL DLLFNFHFLY YFFDNIILGG 120
  121 YIYEINRNII LDKINKIKKL I

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.69897
Match:	1w63Q
Description:	AP1 clathrin adaptor core
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits