YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7452513
Organism:	Plasmodium falciparum
Length:	250 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7452513.

Description	E-value	Query Range	Subject Range
gi\|23490832 - gi\|23490832\|gb\|EAA22514.1\| putative secreted protein with altered thrombospondin domain [Plasmodium ... gi\|83315798 - gi\|83315798\|ref\|XP_730949.1\| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]	446.0	[0..1]	[250..1]
gi\|15193060 - gi\|15193060\|gb\|AAK91677.1\|AF390551_1 putative secreted protein with altered thrombospondin domain [P...	444.0	[0..1]	[250..1]
gi\|56526679 - gi\|56526679\|emb\|CAH79324.1\| conserved hypothetical protein [Plasmodium chabaudi chabaudi] gi\|70954189 - gi\|70954189\|ref\|XP_746153.1\| hypothetical protein [Plasmodium chabaudi chabaudi]	422.0	[0..1]	[250..1]
gi\|61697129 - gi\|61697129\|gb\|AAX53168.1\| SPATR [Plasmodium vivax]	360.0	[0..1]	[250..1]
gi\|61661429 - gi\|61661429\|gb\|AAX51302.1\| SPATR [Plasmodium knowlesi]	355.0	[0..1]	[250..1]
gi\|56498566 - gi\|56498566\|emb\|CAH95175.1\| conserved hypothetical protein [Plasmodium berghei] gi\|68072535 - gi\|68072535\|ref\|XP_678181.1\| hypothetical protein [Plasmodium berghei strain ANKA]	338.0	[0..75]	[250..6]
gi\|95007169\|emb\|... - hypothetical protein, expressed [Toxoplasma gondii RH] gi\|95007169 - gi\|95007169\|emb\|CAJ20390.1\| hypothetical protein, expressed [Toxoplasma gondii RH]	118.0	[0..103]	[250..378]

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Predicted Domain #1

Region A:
Residues: [1-250]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKSRFLLLS IFFCFVTNIS LEFKRKQKVE INSLQTNKNN DNIREEKIKG DVESQPDVDG  60
   61 DTCVIFSSSE GNSRNCWCPR GYILCSEEDV LDVQGKLNEI KNKHERSLVT PLWMKRLCDN 120
  121 SNDVGFKSMS VVIDYELAVL CKDGSNKDYA DFEIIGASGY ITGEEMIEEQ KRNPWYVPRK 180
  181 CTVNNFYLCR KVENDNVNCS YTPWSDWSAC KNNTQKRYRK VRRSNQNNEN FCLWNDKIVP 240
  241 RNIMEQTRSC

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.79
Match:	1w0rA
Description:	Solution structure of dimeric form of properdin by X-ray solution scattering and analytical ultracentrifugation
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits