YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7494378
Organism:	Plasmodium falciparum
Length:	235 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7494378.

Description	E-value	Query Range	Subject Range
gi\|23480006 - gi\|23480006\|gb\|EAA16684.1\| hypothetical protein [Plasmodium yoelii yoelii] gi\|82593714 - gi\|82593714\|ref\|XP_725119.1\| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]	291.0	[0..22]	[233..15]
gi\|56498333 - gi\|56498333\|emb\|CAI00268.1\| conserved hypothetical protein [Plasmodium berghei] gi\|68072187 - gi\|68072187\|ref\|XP_678007.1\| hypothetical protein [Plasmodium berghei strain ANKA]	279.0	[0..22]	[233..17]
gi\|70935445 - gi\|70935445\|ref\|XP_738805.1\| hypothetical protein [Plasmodium chabaudi chabaudi] gi\|56515319 - gi\|56515319\|emb\|CAH79401.1\| conserved hypothetical protein [Plasmodium chabaudi chabaudi]	112.0	[0..159]	[233..1]

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Predicted Domain #1

Region A:
Residues: [1-151]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGKGSFFFC WIFLISFLYL INVIVCKQTI LKLSYQINSF NSDAKKKEWT NIGSFILNSI  60
   61 KIYDISNTYV EEKRKFLEKM KNVELHFDYV LFQLCYDESK CLETYVNKEN IKNINNFVFL 120
  121 LGLDNNYTPF ILNYKIYNHE ELYNQKINKY N

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [152-235]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NEIIYSNLFI IKFPTVSTPI NINNITTEDI HMKPKTQKNE KINDQNQPKS FLRKYWFIIL  60
   61 IFFLSFSFSK HLTENEPQPP DNTS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits