YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7447281
Organism:	Plasmodium falciparum
Length:	106 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7447281.

Description	E-value	Query Range	Subject Range
gi\|73959879 - gi\|73959879\|ref\|XP_854405.1\| PREDICTED: similar to DNA-directed RNA polymerases III 12.5 kDa polypep...	128.0	[0..1]	[106..25]
gi\|46438863, gi\|... - gi\|68477862\|ref\|XP_717083.1\| hypothetical protein CaO19.12820 [Candida albicans SC5314], gi\|68477699... orf19.12820, orf... - RPC11 CGDID:CAL0004345 Assembly 19, Contig19-10225 (127260, 127595) CDS, translated using codon tabl...	124.0	[0..1]	[106..1]
gi\|21956651 - gi\|21956651\|gb\|AAM83406.1\| POLR3K [Sphoeroides nephelus]	124.0	[0..1]	[106..1]
gi\|47220062 - gi\|47220062\|emb\|CAG12210.1\| unnamed protein product [Tetraodon nigroviridis]	123.0	[0..1]	[106..1]
gi\|44985907 - gi\|44985907\|gb\|AAS54518.1\| AGR029Wp [Ashbya gossypii ATCC 10895] gi\|45201124, gi\|... - gi\|45201124\|ref\|NP_986694.1\| AGR029Wp [Ashbya gossypii ATCC 10895], gi\|44985907\|gb\|AAS54518.1\| AGR02...	123.0	[0..1]	[106..1]
gi\|148237221, gi... - gi\|38511445\|gb\|AAH61683.1\| MGC68582 protein [Xenopus laevis], gi\|148237221\|ref\|NP_001083658.1\| DNA-d...	123.0	[0..1]	[106..1]
gi\|50540172, gi\|... - gi\|50540172\|ref\|NP_001002553.1\| polymerase (RNA) III (DNA directed) polypeptide K [Danio rerio], gi\|...	122.0	[0..1]	[106..1]
gi\|88182107, gi\|... - gi\|88182107\|gb\|EAQ89575.1\| conserved hypothetical protein [Chaetomium globosum CBS 148.51], gi\|11619...	122.0	[0..3]	[106..4]
gi\|38567336 - gi\|38567336\|emb\|CAE76624.1\| probable DNA-directed RNA polymerase III subunit C11 [Neurospora crassa]	122.0	[0..4]	[106..5]
gi\|51980360 - gb\|AAH82176.1\| Unknown (protein for MGC:98608) [Xenopus laevis] gi\|114660088 - gi\|114660088\|ref\|XP_001150299.1\| PREDICTED: hypothetical protein [Pan troglodytes] gi\|160904110 - gi\|160904110\|gb\|ABX52097.1\| polymerase III polypeptide K, 12.3 kDa (predicted) [Papio anubis] RPC10_MOUSE - DNA-directed RNA polymerase III subunit RPC10 OS=Mus musculus GN=Polr3k PE=3 SV=1 gi\|167427355 - gi\|167427355\|gb\|ABZ80330.1\| DNA directed RNA polymerase III polypeptide K (predicted) [Callithrix ja... gi\|126335251 - gi\|126335251\|ref\|XP_001364724.1\| PREDICTED: hypothetical protein [Monodelphis domestica] gi\|169246090 - gi\|169246090\|gb\|ACA51066.1\| DNA directed RNA polymerase III polypeptide K (predicted) [Callicebus mo... CCDS10395.1_1 - null gi\|183396438 - gi\|183396438\|gb\|ACC62113.1\| DNA directed RNA polymerase III polypeptide K (predicted) [Rhinolophus f... gi\|58477408, gi\|... - gi\|62646566\|ref\|XP_575306.1\| PREDICTED: similar to polymerase (RNA) III (DNA directed) polypeptide K...	122.0	[0..1]	[106..1]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFFCPNCHN IVLVHIEKGV YFYCKSCNYK YKIKNKIYNK FDCQQFNKTI PLDAVDINNK  60
   61 NMSKTQAVCP KCTNDEAYFY TLQIRSADEP STIFYICVKC NYHWKE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.69897
Match:	1i3qI
Description:	RBP9 subunit of RNA polymerase II
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits